YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998090, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998090, gi|....

Description	E-value	Query Range	Subject Range
gi\|88935201, gi\|... - gi\|88935201\|ref\|ZP_01140836.1\| precorrin-8X methylmutase [Geobacter uraniumreducens Rf4], gi\|8891801...	294.0	[0..1]	[213..1]
gi\|78192953, gi\|... - gi\|78221698\|ref\|YP_383445.1\| precorrin-8X methylmutase [Geobacter metallireducens GS-15], gi\|7819295...	284.0	[0..1]	[212..1]
gi\|110675816, gi... - gi\|110801169\|ref\|YP_695880.1\| precorrin-8X methylmutase [Clostridium perfringens ATCC 13124], gi\|110... gi\|18310209, gi\|... - gi\|18310209\|ref\|NP_562143.1\| precorrin-8X methylmutase [Clostridium perfringens str. 13], gi\|1814488... gi\|170662977, gi... - gi\|170662977\|gb\|EDT15660.1\| precorrin-8X methylmutase [Clostridium perfringens E str. JGS1987], gi\|1... gi\|110802769, gi... - gi\|110802769\|ref\|YP_698563.1\| precorrin-8X methylmutase [Clostridium perfringens SM101], gi\|11068327... gi\|177910653, gi... - gi\|182624239\|ref\|ZP_02952025.1\| precorrin-8X methylmutase [Clostridium perfringens D str. JGS1721], ... gi\|169343999, gi... - gi\|169343999\|ref\|ZP_02864990.1\| precorrin-8X methylmutase [Clostridium perfringens C str. JGS1495], ... gi\|182380843, gi... - gi\|182380843\|gb\|EDT78322.1\| precorrin-8X methylmutase [Clostridium perfringens NCTC 8239], gi\|168217... gi\|168209651, gi... - gi\|170712225\|gb\|EDT24407.1\| precorrin-8X methylmutase [Clostridium perfringens B str. ATCC 3626], gi...	284.0	[0..1]	[209..1]
gi\|225617758, gi... - gi\|225627753\|ref\|ZP_03785790.1\| Precorrin-8X methylmutase [Brucella ceti str. Cudo], gi\|225617758\|gb... gi\|23348128, gi\|... - gi\|23502163\|ref\|NP_698290.1\| precorrin-8X methylmutase [Brucella suis 1330], gi\|23348128\|gb\|AAN30205... gi\|254714344 - gi\|254714344\|ref\|ZP_05176155.1\| precorrin-8X methylmutase [Brucella ceti M644/93/1] gi\|254710348 - gi\|254710348\|ref\|ZP_05172159.1\| precorrin-8X methylmutase [Brucella pinnipedialis B2/94] gi\|254704562 - gi\|254704562\|ref\|ZP_05166390.1\| precorrin-8X methylmutase [Brucella suis bv. 3 str. 686] gi\|254702021 - gi\|254702021\|ref\|ZP_05163849.1\| precorrin-8X methylmutase [Brucella suis bv. 5 str. 513] gi\|254717243 - gi\|254717243\|ref\|ZP_05179054.1\| precorrin-8X methylmutase [Brucella ceti M13/05/1] gi\|161336049, gi... - gi\|161619238\|ref\|YP_001593125.1\| precorrin-8X methylmutase [Brucella canis ATCC 23365], gi\|161336049... gi\|163843550, gi... - gi\|163843550\|ref\|YP_001627954.1\| precorrin-8X methylmutase [Brucella suis ATCC 23445], gi\|163674273\|...	276.0	[0..1]	[207..1]
gi\|45655713, gi\|... - gi\|45655713\|ref\|YP_003522.1\| precorrin isomerase [Leptospira interrogans serovar Copenhageni str. Fi...	275.0	[0..1]	[210..1]
gi\|237815700, gi... - gi\|237815700\|ref\|ZP_04594697.1\| Precorrin-8X methylmutase [Brucella abortus str. 2308 A], gi\|2377889... gi\|189019999, gi... - gi\|189024427\|ref\|YP_001935195.1\| Precorrin-8X methylmutase CbiC/CobH [Brucella abortus S19], gi\|1890... gi\|254697635 - gi\|254697635\|ref\|ZP_05159463.1\| precorrin-8X methylmutase [Brucella abortus bv. 2 str. 86/8/59] gi\|254706541 - gi\|254706541\|ref\|ZP_05168369.1\| precorrin-8X methylmutase [Brucella pinnipedialis M163/99/10] gi\|254730525 - gi\|254730525\|ref\|ZP_05189103.1\| precorrin-8X methylmutase [Brucella abortus bv. 4 str. 292] gi\|62290193, gi\|... - gi\|62290193\|ref\|YP_221986.1\| precorrin-8X methylmutase [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|82700114 - gi\|82700114\|ref\|YP_414688.1\| precorrin-8X methylmutase [Brucella melitensis biovar Abortus 2308] gi\|82616215 - gi\|82616215\|emb\|CAJ11261.1\| Precorrin-8X methylmutase CbiC/CobH [Brucella melitensis biovar Abortus ...	273.0	[0..1]	[207..1]
gi\|25304823 - pir\|\|AD3341 precorrin-8x methylmutase (EC 5.4.1.2) [imported] - Brucella melitensis (strain 16M) gi\|254693984 - gi\|254693984\|ref\|ZP_05155812.1\| precorrin-8X methylmutase [Brucella abortus bv. 3 str. Tulya] gi\|17986997, gi\|... - gi\|17986997\|ref\|NP_539631.1\| precorrin-8X methylmutase [Brucella melitensis 16M], gi\|17982648\|gb\|AAL... gi\|225852779, gi... - gi\|225852779\|ref\|YP_002733012.1\| Precorrin-8X methylmutase [Brucella melitensis ATCC 23457], gi\|2256... gi\|254689497 - gi\|254689497\|ref\|ZP_05152751.1\| precorrin-8X methylmutase [Brucella abortus bv. 6 str. 870]	272.0	[0..1]	[207..1]
gi\|93278669, gi\|... - gi\|93278671\|pdb\|2AFV\|B Chain B, The Crystal Structure Of Putative Precorrin Isomerase Cbic In Cobala...	272.0	[0..1]	[210..1]
gi\|24217222, gi\|... - gi\|24217222\|ref\|NP_714705.1\| cobalamin biosynthesis precorrin isomerase [Leptospira interrogans sero...	272.0	[0..1]	[210..1]
gi\|77685628, gi\|... - gi\|77685628\|ref\|ZP_00801020.1\| Precorrin-8X methylmutase CbiC/CobH [Alkaliphilus metalliredigenes QY...	271.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVHLRPEEI EAESFRIIDA EAGSHSWGPD QWPVVRRVIH TSADFDYARS MVFSPDAVPR  60
   61 ALAALKAGRG IVTDTTMALS GIAKPRLERF GISVSCFVAD PDVARRAREQ GITRSILALR 120
  121 AGASDRGNGI FVIGNAPTAL FELIRLVREE GLRPDLVVGL PVGFVGAAES KEALLALEHE 180
  181 VPEVPFITNR GRKGGSNVAA AVVNALLIMA MEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.30103
Match:	2afrA
Description:	No description for 2afrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits