YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998089, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998089, gi|....

Description	E-value	Query Range	Subject Range
gi\|88778800, gi\|... - gi\|88798360\|ref\|ZP_01113945.1\| transcriptional repressor of sporulation and degradative enzyme produ...	151.0	[0..1]	[170..1]
gi\|77385857, gi\|... - gi\|77461854\|ref\|YP_351361.1\| negative transcriptional regulator [Pseudomonas fluorescens Pf0-1], gi\|...	149.0	[0..1]	[172..11]
gi\|13470340, gi\|... - gi\|14021078\|dbj\|BAB47691.1\| transcriptional regulator [Mesorhizobium loti MAFF303099], gi\|13470340\|r...	148.0	[0..4]	[173..5]
gi\|27352417, gi\|... - gi\|27379266\|ref\|NP_770795.1\| hypothetical protein blr4155 [Bradyrhizobium japonicum USDA 110], gi\|27...	148.0	[0..2]	[180..20]
gi\|21219866, gi\|... - gi\|21219866\|ref\|NP_625645.1\| hypothetical protein SCO1361 [Streptomyces coelicolor A3(2)], gi\|131221...	147.0	[0..2]	[176..25]
gi\|28855866, gi\|... - gi\|28872610\|ref\|NP_795229.1\| transcriptional regulator, putative [Pseudomonas syringae pv. tomato st... tr\|Q87U10\|Q87U10... - Transcriptional regulator, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_5505...	145.0	[0..1]	[172..1]
gi\|75701880, gi\|... - gi\|75908155\|ref\|YP_322451.1\| hypothetical protein Ava_1934 [Anabaena variabilis ATCC 29413], gi\|7570...	145.0	[0..2]	[179..15]
gi\|29610664, gi\|... - gi\|29833541\|ref\|NP_828175.1\| hypothetical protein SAV_6999 [Streptomyces avermitilis MA-4680], gi\|29...	144.0	[0..2]	[175..30]
PAIB_BACSU - Protease synthase and sporulation protein PAI 2 OS=Bacillus subtilis GN=paiB PE=1 SV=3 PAIB_BACSU - Protease synthase and sporulation protein PAI 2 OS=Bacillus subtilis (strain 168) GN=paiB PE=1 SV=3	143.0	[0..1]	[170..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKANKRITD FDIIRRMLDT CHVGRLGTLG ADGWPRIKPL NFAWHEGRIY FHCALEGEKL  60
   61 DDIRHEDRVC FEVDLPIAYV RGTTETPCRA EYLYRSVIMR GRARLVEEAA EKVLALDCLM 120
  121 RKYQPDGTWG SFPEEKLAIT GIVRIDVEEV VGKEELGKDE LREQALAMLA SGVPLPAILG 180
  181

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Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2fg9A
Description:	Crystal structure of (np_811990.1) from BACTERIODES THETAIOTAOMICRON VPI-5482 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.264918485932562	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: