YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998067, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998067, gi|....

Description	E-value	Query Range	Subject Range
gi\|71741857, gi\|... - gi\|71837575\|ref\|ZP_00677339.1\| DedA [Pelobacter propionicus DSM 2379], gi\|71741857\|gb\|EAO37011.1\| De...	150.0	[0..1]	[197..1]
gi\|68202954, gi\|... - gi\|68229389\|ref\|ZP_00568584.1\| DedA [Frankia sp. EAN1pec], gi\|68202954\|gb\|EAN17131.1\| DedA [Frankia ...	148.0	[0..10]	[198..19]
gi\|4808350, gi\|2... - gi\|4808350\|emb\|CAB42764.1\| possible membrane protein [Streptomyces coelicolor A3(2)], gi\|21221838\|re... gi\|7481018 - pir\|\|T36337 probable membrane protein - Streptomyces coelicolor	147.0	[0..11]	[198..16]
gi\|146396284, gi... - gi\|88936199\|ref\|ZP_01141815.1\| DedA family protein [Geobacter uraniumreducens Rf4], gi\|88917082\|gb\|E...	145.0	[0..1]	[197..1]
gi\|48847225, gi\|... - gi\|78221723\|ref\|YP_383470.1\| hypothetical protein Gmet_0502 [Geobacter metallireducens GS-15], gi\|78...	144.0	[0..1]	[181..1]
gi\|29608316, gi\|... - gi\|29831202\|ref\|NP_825836.1\| hypothetical protein SAV_4659 [Streptomyces avermitilis MA-4680], gi\|29...	144.0	[0..9]	[197..14]
gi\|25027480, gi\|... - gi\|25027480\|ref\|NP_737534.1\| hypothetical protein CE0924 [Corynebacterium efficiens YS-314], gi\|2349...	144.0	[0..4]	[197..2]
gi\|83943603, gi\|... - gi\|83943603\|ref\|ZP_00956062.1\| DedA [Sulfitobacter sp. EE-36], gi\|83845835\|gb\|EAP83713.1\| DedA [Sulf...	143.0	[0..4]	[195..1]
gi\|57018836, gi\|... - gi\|57240495\|ref\|ZP_00368444.1\| DedA family protein [Campylobacter lari RM2100], gi\|57018836\|gb\|EAL55...	143.0	[0..1]	[198..2]
gi\|83840712, gi\|... - gi\|83954986\|ref\|ZP_00963664.1\| DedA [Sulfitobacter sp. NAS-14.1], gi\|83840712\|gb\|EAP79884.1\| DedA [S...	142.0	[0..4]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQAIDWLVA TIGAMGYPGI FILMAMESSV FPVPSELVMP PAGYLAQQGE MNIWLAIFLG  60
   61 TAGSLAGAYA NYFAAHYLGR PLLLKYGKYV WITEEKFARV ESFFHKHGEI STFIGRLLPV 120
  121 VRHLISLPAG LAGMHHGTFT LYTLLGAFIW CTILAWIGYV IGENRDLIME YSHQALIGVV 180
  181 IFSVALVAVY VWRHRRKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.30103
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits