YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998044, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998044, gi|....

Description	E-value	Query Range	Subject Range
gi\|56421757, gi\|... - gi\|56421757\|ref\|YP_149075.1\| arsenate reductase [Geobacillus kaustophilus HTA426], gi\|56381599\|dbj\|B...	172.0	[0..1]	[138..1]
gi\|89088062, gi\|... - gi\|89097239\|ref\|ZP_01170129.1\| ArsC [Bacillus sp. NRRL B-14911], gi\|89088062\|gb\|EAR67173.1\| ArsC [Ba...	168.0	[0..1]	[138..1]
ARSC_BACSU - Protein ArsC OS=Bacillus subtilis (strain 168) GN=arsC PE=1 SV=1 gi\|221324029 - gi\|221324029\|ref\|ZP_03605323.1\| arsenate reductase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319751 - gi\|221319751\|ref\|ZP_03601045.1\| arsenate reductase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221314829 - gi\|221314829\|ref\|ZP_03596634.1\| arsenate reductase [Bacillus subtilis subsp. subtilis str. NCIB 3610... ARSC_BACSU - Protein ArsC OS=Bacillus subtilis GN=arsC PE=1 SV=1	166.0	[0..3]	[138..4]
ARSC_BACLD - Protein ArsC OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9...	166.0	[0..2]	[138..3]
ARSC_BACHD - Protein ArsC OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)... ARSC_BACHD - Protein ArsC OS=Bacillus halodurans GN=arsC PE=3 SV=1	165.0	[0..2]	[138..3]
gi\|20807481, gi\|... - gi\|20807481\|ref\|NP_622652.1\| protein-tyrosine-phosphatase [Thermoanaerobacter tengcongensis MB4], gi... gi\|20807481 - gi\|20807481\|ref\|NP_622652.1\| Protein-tyrosine-phosphatase [Thermoanaerobacter tengcongensis MB4]	163.0	[0..1]	[140..1]
gi\|94969984, gi\|... - gi\|94969984\|ref\|YP_592032.1\| protein tyrosine phosphatase [Candidatus Koribacter versatilis Ellin345...	161.0	[0..2]	[137..13]
ARSC_OCEIH - Protein arsC OS=Oceanobacillus iheyensis GN=arsC PE=3 SV=1 ARSC_OCEIH - Protein ArsC OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=arsC...	161.0	[0..2]	[138..3]
gi\|78192997, gi\|... - gi\|78221742\|ref\|YP_383489.1\| protein tyrosine phosphatase [Geobacter metallireducens GS-15], gi\|7819...	159.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRVLLLCT HNANRSQMAE GLVNYFLSDR WEACSAGTAA TSVNPRAIRA MAELGIDISG  60
   61 QRSKNLTELD GQTFDRVITL CSEAADTCPI FVGGVRRKHL GFDDPSRAAG TDEEIMDEYR 120
  121 RVRDEMRCIL ISCLNRGDHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1jl3A
Description:	Arsenate reductase ArsC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
arsenate reductase (glutaredoxin) activity	4.33079906808883	bayes_pls_golite062009
oxidoreductase activity, acting on phosphorus or arsenic in donors	4.33079906808883	bayes_pls_golite062009
oxidoreductase activity, acting on phosphorus or arsenic in donors, with disulfide as acceptor	4.33079906808883	bayes_pls_golite062009
arsenate reductase activity	4.23566798374485	bayes_pls_golite062009
catalytic activity	1.59583755727481	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.329735390295883	bayes_pls_golite062009
hydrolase activity	0.248928584258571	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.22595591002592	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.169186494698667	bayes_pls_golite062009
phosphatase activity	0.164955011214887	bayes_pls_golite062009
protein tyrosine phosphatase activity	0.146870478777025	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: