YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998014, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998014, gi|....

Description	E-value	Query Range	Subject Range
gi\|71836714, gi\|... - gi\|71836714\|ref\|ZP_00676482.1\| Glutamate racemase [Pelobacter propionicus DSM 2379], gi\|71742926\|gb\|...	304.0	[0..1]	[270..1]
MURI_GEOMG - Glutamate racemase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=murI PE=3 ...	303.0	[0..1]	[270..7]
MUI1_BACSU, MURI... - Glutamate racemase 1 OS=Bacillus subtilis GN=racE PE=1 SV=1, (P94556) Glutamate racemase 1 (EC 5.1.1... gi\|16079891, gi\|... - gi\|2635304\|emb\|CAB14799.1\| glutamate racemase [Bacillus subtilis subsp. subtilis str. 168], gi\|16079...	302.0	[0..1]	[271..1]
gi\|88918137, gi\|... - gi\|88935060\|ref\|ZP_01140697.1\| Glutamate racemase [Geobacter uraniumreducens Rf4], gi\|88918137\|gb\|EA...	301.0	[0..1]	[270..1]
gi\|30259210, gi\|... - gi\|30264552\|ref\|NP_846929.1\| glutamate racemase [Bacillus anthracis str. Ames], gi\|30259210\|gb\|AAP28... gi\|167635587, gi... - gi\|167635587\|ref\|ZP_02393899.1\| glutamate racemase [Bacillus anthracis str. A0442], gi\|167529007\|gb\|... gi\|21402526, gi\|... - gi\|65321850\|ref\|ZP_00394809.1\| COG0796: Glutamate racemase [Bacillus anthracis str. A2012], ref\|NP_6... gi\|165871456, gi... - gi\|165871456\|ref\|ZP_02216103.1\| glutamate racemase [Bacillus anthracis str. A0488], gi\|164712753\|gb\|... gi\|170667806, gi... - gi\|170688300\|ref\|ZP_02879510.1\| glutamate racemase [Bacillus anthracis str. A0465], gi\|170667806\|gb\|... gi\|167510364, gi... - gi\|167641657\|ref\|ZP_02399902.1\| glutamate racemase [Bacillus anthracis str. A0193], gi\|167510364\|gb\|... gi\|190562029, gi... - gi\|190567038\|ref\|ZP_03019954.1\| glutamate racemase [Bacillus anthracis Tsiankovskii-I], gi\|190562029... gi\|49478653, gi\|... - gi\|49478653\|ref\|YP_038536.1\| glutamate racemase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|177653155, gi... - gi\|177653155\|ref\|ZP_02935442.1\| glutamate racemase [Bacillus anthracis str. A0174], gi\|172081679\|gb\|... gi\|49187374, gi\|... - gi\|49187374\|ref\|YP_030626.1\| glutamate racemase [Bacillus anthracis str. Sterne], gi\|49181301\|gb\|AAT... gi\|196039175, gi... - gi\|196039175\|ref\|ZP_03106481.1\| glutamate racemase [Bacillus cereus NVH0597-99], gi\|196029802\|gb\|EDX... gi\|47530017, gi\|... - gi\|47530017\|ref\|YP_021366.1\| glutamate racemase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475051... gi\|195992955, gi... - gi\|196034413\|ref\|ZP_03101822.1\| glutamate racemase [Bacillus cereus W], gi\|195992955\|gb\|EDX56914.1\| ... gi\|218535114, gi... - gi\|218905685\|ref\|YP_002453519.1\| glutamate racemase [Bacillus cereus AH820], gi\|218535114\|gb\|ACK8751... gi\|196044858, gi... - gi\|196044858\|ref\|ZP_03112092.1\| glutamate racemase [Bacillus cereus 03BB108], gi\|196024346\|gb\|EDX630... MURI_BACC3 - Glutamate racemase OS=Bacillus cereus (strain 03BB102) GN=murI PE=3 SV=1 gi\|227006462, gi... - gi\|227817263\|ref\|YP_002817272.1\| glutamate racemase [Bacillus anthracis str. CDC 684], gi\|227006462\|... gi\|228830109, gi... - gi\|228929530\|ref\|ZP_04092549.1\| Glutamate racemase [Bacillus thuringiensis serovar pondicheriensis B... gi\|229602085, gi... - gi\|229602085\|ref\|YP_002868766.1\| glutamate racemase [Bacillus anthracis str. A0248], gi\|229266493\|gb... gi\|254687028 - gi\|254687028\|ref\|ZP_05150886.1\| glutamate racemase [Bacillus anthracis str. CNEVA-9066] gi\|254724590 - gi\|254724590\|ref\|ZP_05186373.1\| glutamate racemase [Bacillus anthracis str. A1055] gi\|254736586 - gi\|254736586\|ref\|ZP_05194292.1\| glutamate racemase [Bacillus anthracis str. Western North America US... gi\|254741624 - gi\|254741624\|ref\|ZP_05199311.1\| glutamate racemase [Bacillus anthracis str. Kruger B] gi\|254754778 - gi\|254754778\|ref\|ZP_05206813.1\| glutamate racemase [Bacillus anthracis str. Vollum] gi\|254757610 - gi\|254757610\|ref\|ZP_05209637.1\| glutamate racemase [Bacillus anthracis str. Australia 94]	300.0	[0..1]	[268..1]
gi\|47776277 - gi\|47776277\|dbj\|BAD20742.1\| glutamate racemase [Bacillus subtilis]	300.0	[0..4]	[271..3]
gi\|229192695, gi... - gi\|229192695\|ref\|ZP_04319654.1\| Glutamate racemase [Bacillus cereus ATCC 10876], gi\|228590785\|gb\|EEK... gi\|229180762, gi... - gi\|229180762\|ref\|ZP_04308100.1\| Glutamate racemase [Bacillus cereus 172560W], gi\|228602740\|gb\|EEK602... gi\|229147053, gi... - gi\|229147053\|ref\|ZP_04275413.1\| Glutamate racemase [Bacillus cereus BDRD-ST24], gi\|228636441\|gb\|EEK9... gi\|29898133, gi\|... - gi\|30022575\|ref\|NP_834206.1\| glutamate racemase [Bacillus cereus ATCC 14579], gi\|29898133\|gb\|AAP1140... MURI_BACC4 - Glutamate racemase OS=Bacillus cereus (strain B4264) GN=murI PE=3 SV=1 MURI_BACC2 - Glutamate racemase OS=Bacillus cereus (strain G9842) GN=murI PE=3 SV=1 gi\|206735485, gi... - gi\|206969797\|ref\|ZP_03230751.1\| glutamate racemase [Bacillus cereus AH1134], gi\|206735485\|gb\|EDZ5265... gi\|228671519, gi... - gi\|229111955\|ref\|ZP_04241499.1\| Glutamate racemase [Bacillus cereus Rock1-15], gi\|228671519\|gb\|EEL26... gi\|228711160, gi... - gi\|229072001\|ref\|ZP_04205211.1\| Glutamate racemase [Bacillus cereus F65185], gi\|228711160\|gb\|EEL6312... gi\|228723187, gi... - gi\|229048200\|ref\|ZP_04193769.1\| Glutamate racemase [Bacillus cereus AH676], gi\|228723187\|gb\|EEL74563... gi\|228849377, gi... - gi\|228910317\|ref\|ZP_04074134.1\| Glutamate racemase [Bacillus thuringiensis IBL 200], gi\|228849377\|gb...	300.0	[0..1]	[268..1]
MURI_BACCZ - Glutamate racemase OS=Bacillus cereus (strain ZK / E33L) GN=murI PE=3 SV=1	300.0	[0..1]	[268..1]
gi\|217961978, gi... - gi\|217961978\|ref\|YP_002340548.1\| glutamate racemase [Bacillus cereus AH187], gi\|217068220\|gb\|ACJ8247... gi\|206975961, gi... - gi\|206975961\|ref\|ZP_03236871.1\| glutamate racemase [Bacillus cereus H3081.97], gi\|206745713\|gb\|EDZ57... gi\|221242004, gi... - gi\|222097946\|ref\|YP_002532003.1\| glutamate racemase [Bacillus cereus Q1], gi\|221242004\|gb\|ACM14714.1... MURI_BACC1 - Glutamate racemase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=murI PE=2 SV=2 gi\|229141225, gi... - gi\|229141225\|ref\|ZP_04269764.1\| Glutamate racemase [Bacillus cereus BDRD-ST26], gi\|228642266\|gb\|EEK9...	299.0	[0..1]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWKAIGIFD SGVGGLTVLK EIIKVLPQED TIYLGDTARV PYGTKSPETV TRYSLEIASF  60
   61 LVKRDIKLLV VACNTASAAS LEALTERLPI PVVGVIEPGA RRAVATTRTG KVGVIGTEGT 120
  121 IRSSAYAKAI KRLNPEVEVI TRACPLFVPL AEEGWTDNEV ARLTARTYLA GLREQGVDTI 180
  181 VLGCTHYPLL KRVIGETVGE DVRLVDSAEE TARTVADILR GRDLLRPDGE QGNHHFFVTD 240
  241 VPAGFIRVGN RFIGGRLGDV YQVSLDAEKE RP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.09691
Match:	1zuwA
Description:	Crystal structure of B.subtilis glutamate racemase (RacE) with D-Glu
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits