YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984916, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984916, gi|....

Description	E-value	Query Range	Subject Range
gi\|83857085, gi\|... - gi\|83857085\|ref\|ZP_00950613.1\| putative membrane protein [Croceibacter atlanticus HTCC2559], gi\|8384...	209.0	[0..13]	[275..747]
gi\|91215719, gi\|... - gi\|91215719\|ref\|ZP_01252689.1\| Cytochrome c assembly protein [Psychroflexus torquis ATCC 700755], gi...	200.0	[0..7]	[275..802]
gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027... gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027...	198.0	[0..7]	[275..773]
gi\|57018869, gi\|... - gi\|57240528\|ref\|ZP_00368477.1\| cytochrome c biogenesis protein (ycf5) [Campylobacter lari RM2100], g...	196.0	[0..7]	[275..727]
gi\|34484157 - gi\|34484157\|emb\|CAE11153.1\| CYTOCHROME C BIOGENESIS PROTEIN (YCF5) [Wolinella succinogenes] gi\|34558438 - gi\|34558438\|ref\|NP_908253.1\| cytochrome c biogenesis protein (ycf5) [Wolinella succinogenes DSM 1740...	194.0	[0..1]	[275..623]
gi\|146155118, gi... - gi\|90587888\|ref\|ZP_01243541.1\| Cytochrome c assembly protein [Flavobacterium johnsoniae UW101], gi\|9...	192.0	[0..14]	[275..776]
gi\|85819353, gi\|... - gi\|86130678\|ref\|ZP_01049278.1\| Cytochrome c assembly protein [Cellulophaga sp. MED134], gi\|85819353\|...	192.0	[0..13]	[274..783]
gi\|57237900, gi\|... - gi\|57237900\|ref\|YP_179148.1\| CcmF/CcyK/CcsA family cytochrome c biogenesis protein [Campylobacter je...	192.0	[0..14]	[275..781]
gi\|87249128, gi\|... - gi\|87305824\|ref\|ZP_01087977.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|85843625, gi\|... - gi\|86152740\|ref\|ZP_01070945.1\| nrfi protein [Campylobacter jejuni subsp. jejuni HB93-13], gi\|8584362...	192.0	[0..14]	[275..781]
gi\|88191337, gi\|... - gi\|88596496\|ref\|ZP_01099733.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|86150451, gi\|... - gi\|86150451\|ref\|ZP_01068676.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|11347010 - pir\|\|B81303 probable membrane protein Cj1013c [imported] - Campylobacter jejuni (strain NCTC 11168) gi\|218562629, gi... - gi\|6968449\|emb\|CAB73269.1\| putative membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168]...	191.0	[0..14]	[275..781]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTPSFAAY VGAHWAAVVI YVIATVVNVY GLLFRSEPAE RWSYRLISVG WMIHSVVIAY  60
   61 WWWVTGHGPY LSRNEVLSSD AWIALTVFMC FQRLYPRVRP ASIVVFPSVF LMIALGLFFD 120
  121 VQIRTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTFSGIWLV IHIAFYKIAL GTILIALACS IFLVLKKRTP FAWLQRLPDL ESLDLHAYRF  60
   61 AGFGFIIWAI AMLAGSIWAY KSWGRFWGWD PVENWSLITW ILFGIHLHLR RFFRWSGERA 120
  121 ALFYVVCFIF SLVALFYTSH MDTSIHMEYF R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits