YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984905, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984905, gi|....

Description	E-value	Query Range	Subject Range
gi\|92432232, gi\|... - gi\|92910144\|ref\|ZP_01278920.1\| SecE subunit of protein translocation complex [Mycobacterium sp. JLS]...	81.0	[0..4]	[66..144]
gi\|120402245, gi... - gi\|90202746\|ref\|ZP_01205392.1\| SecE subunit of protein translocation complex [Mycobacterium vanbaale...	78.0	[0..5]	[65..86]
gi\|41410208, gi\|... - gi\|41410208\|ref\|NP_963044.1\| preprotein translocase subunit SecE [Mycobacterium avium subsp. paratub...	77.0	[0..5]	[66..86]
SECE_VIBAL - Protein translocase subunit SecE OS=Vibrio alginolyticus GN=secE PE=3 SV=1	77.0	[0..3]	[66..62]
gi\|28807954 - gi\|28807954\|dbj\|BAC61191.1\| preprotein translocase, SecE subunit [Vibrio parahaemolyticus RIMD 22106... gi\|28807954, gi\|... - gi\|28899702\|ref\|NP_799307.1\| preprotein translocase subunit SecE [Vibrio parahaemolyticus RIMD 22106...	77.0	[0..3]	[66..62]
gi\|121492206, gi... - gi\|121636559\|ref\|YP_976782.1\| preprotein translocase subunit SecE [Mycobacterium bovis BCG str. Past... gi\|254363592, gi... - gi\|254363592\|ref\|ZP_04979638.1\| preprotein translocase secE1 [Mycobacterium tuberculosis str. Haarle... gi\|194543021, gi... - gi\|81255498\|ref\|ZP_00879974.1\| COG0690: Preprotein translocase subunit SecE [Mycobacterium tuberculo... gi\|148720369, gi... - gi\|76785662\|ref\|ZP_00772827.1\| COG0690: Preprotein translocase subunit SecE [Mycobacterium tuberculo... gi\|148660412, gi... - gi\|167969068\|ref\|ZP_02551345.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis H37R... gi\|255098157 - gi\|255098157\|ref\|ZP_05327635.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis KZN ... gi\|254817183 - gi\|254817183\|ref\|ZP_05222184.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis KZN ... gi\|253319081, gi... - gi\|253797578\|ref\|YP_003030579.1\| preprotein translocase subunit secE1 [Mycobacterium tuberculosis KZ... SECE_MYCTO - Protein translocase subunit SecE OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=secE P... gi\|215402413 - gi\|215402413\|ref\|ZP_03414594.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis 02_1... gi\|215410185 - gi\|215410185\|ref\|ZP_03418993.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis 94_M... gi\|215444757 - gi\|215444757\|ref\|ZP_03431509.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis T85] gi\|224989031, gi... - gi\|224989031\|ref\|YP_002643718.1\| preprotein translocase subunit SecE [Mycobacterium bovis BCG str. T... SECE_MYCBO - Probable preprotein translocase subunit secE OS=Mycobacterium bovis GN=secE PE=3 SV=1 SECE_MYCBO - Protein translocase subunit SecE OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=secE PE... SECE_MYCTU - Protein translocase subunit SecE OS=Mycobacterium tuberculosis GN=secE PE=3 SV=1 SECE_MYCTU - Protein translocase subunit SecE OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=secE P...	77.0	[0..5]	[66..100]
gi\|108797895, gi... - gi\|108797895\|ref\|YP_638092.1\| preprotein translocase subunit SecE [Mycobacterium sp. MCS], gi\|108768... gi\|119693079, gi... - gi\|92913608\|ref\|ZP_01282236.1\| SecE subunit of protein translocation complex [Mycobacterium sp. KMS]...	77.0	[0..4]	[66..84]
gi\|145218180, gi... - gi\|89338460\|ref\|ZP_01191225.1\| SecE subunit of protein translocation complex [Mycobacterium flavesce...	77.0	[0..5]	[65..90]
gi\|75255008 - gi\|75255008\|ref\|ZP_00726929.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli E22]	76.0	[0..4]	[66..62]
gi\|108774027, gi... - gi\|229900554\|ref\|ZP_04515680.1\| preprotein translocase membrane subunit [Yersinia pestis Nepal516], ... gi\|161484891 - gi\|161484891\|ref\|NP_667816.2\| preprotein translocase subunit SecE [Yersinia pestis KIM] gi\|186893633, gi... - gi\|186893633\|ref\|YP_001870745.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis PB... gi\|229704187, gi... - gi\|229837499\|ref\|ZP_04457661.1\| preprotein translocase membrane subunit [Yersinia pestis Pestoides A... gi\|77635957, gi\|... - gi\|77635957\|ref\|ZP_00798036.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis Angola]... gi\|229695801, gi... - gi\|229839435\|ref\|ZP_04459594.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|77631228, gi\|... - gi\|77631228\|ref\|ZP_00793814.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pseudotubercul... Q66FQ8\|Q66FQ8_YERPS - Preprotein translocase SecE subunit - Yersinia pseudotuberculosis gi\|25301347 - pir\|\|AI0456 preprotein translocase SecE chain [imported] - Yersinia pestis (strain CO92) gi\|218930758, gi... - gi\|218930758\|ref\|YP_002348633.1\| preprotein translocase subunit SecE [Yersinia pestis CO92], gi\|1612... gi\|161511332 - gi\|161511332\|ref\|NP_994409.2\| preprotein translocase subunit SecE [Yersinia pestis biovar Microtus s... gi\|51587914, gi\|... - gi\|51594632\|ref\|YP_068823.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis IP 329... gi\|165919658, gi... - gi\|165928319\|ref\|ZP_02224151.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|165938231, gi... - gi\|89103178\|ref\|ZP_01175767.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis biovar ... gi\|166012041, gi... - gi\|166012041\|ref\|ZP_02232939.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|108781529, gi... - gi\|108809616\|ref\|YP_653532.1\| preprotein translocase subunit SecE [Yersinia pestis Antiqua], gi\|1087... gi\|166214395, gi... - gi\|166214395\|ref\|ZP_02240430.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|167048206, gi... - gi\|167402426\|ref\|ZP_02307886.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|153997213, gi... - gi\|153997213\|ref\|ZP_02022320.1\| preprotein translocase SecE subunit [Yersinia pestis CA88-4125], gi\|... gi\|166957159, gi... - gi\|167422948\|ref\|ZP_02314701.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|145212690, gi... - gi\|145600994\|ref\|YP_001165070.1\| preprotein translocase subunit SecE [Yersinia pestis Pestoides F], ... gi\|167054185, gi... - gi\|167426803\|ref\|ZP_02318556.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Mediaev... gi\|170022591, gi... - gi\|170022591\|ref\|YP_001719096.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis YP...	75.0	[0..4]	[66..62]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGPRVIAKT KEFLTEVKAE LDKVTWPTRK ETVSTTWVVV AIVLLISVYL GVCDVVLAKL  60
   61 MRIILG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits