YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997896, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997896, gi|....

Description	E-value	Query Range	Subject Range
gi\|86606479, gi\|... - gi\|86606479\|ref\|YP_475242.1\| nitrogenase cofactor biosynthesis protein NifB [Synechococcus sp. JA-3-... gi\|86606479 - gi\|86606479\|ref\|YP_475242.1\| nitrogenase cofactor biosynthesis protein NifB [Cyanobacteria bacterium...	125.0	[0..1]	[108..360]
gi\|86556456, gi\|... - gi\|86607914\|ref\|YP_476676.1\| nitrogenase cofactor biosynthesis protein NifB [Synechococcus sp. JA-2-... gi\|86607914 - gi\|86607914\|ref\|YP_476676.1\| nitrogenase cofactor biosynthesis protein NifB [Cyanobacteria bacterium...	124.0	[0..1]	[108..360]
gi\|14547234 - gi\|14547234\|emb\|CAC42520.1\| NifB protein [Pseudomonas stutzeri]	124.0	[0..1]	[109..375]
gi\|67158337 - gi\|67158337\|ref\|ZP_00419328.1\| Nitrogenase cofactor biosynthesis protein NifB [Azotobacter vinelandi... gi\|67084832, gi\|... - gi\|67158337\|ref\|ZP_00419328.1\| Nitrogenase cofactor biosynthesis protein NifB [Azotobacter vinelandi...	123.0	[0..1]	[109..376]
NIFB_AZOVI - FeMo cofactor biosynthesis protein NifB OS=Azotobacter vinelandii GN=nifB PE=3 SV=1	123.0	[0..1]	[109..375]
gi\|75910116, gi\|... - gi\|75910116\|ref\|YP_324412.1\| nitrogenase cofactor biosynthesis protein NifB [Anabaena variabilis ATC... NIFB_TRIAZ - FeMo cofactor biosynthesis protein NifB OS=Trichormus azollae GN=nifB PE=3 SV=1	123.0	[0..1]	[107..367]
gi\|148257182, gi... - gi\|78696252\|ref\|ZP_00860762.1\| nitrogenase molybdenum-iron protein NifX [Bradyrhizobium sp. BTAi1], ... gi\|146195087, gi... - gi\|146342281\|ref\|YP_001207329.1\| nitrogenase molybdenum-iron protein nifX [Bradyrhizobium sp. ORS278...	123.0	[0..1]	[109..1]
gi\|145555539, gi... - gi\|83371122\|ref\|ZP_00915945.1\| nitrogenase FeMo cofactor synthesis protein [Rhodobacter sphaeroides ...	122.0	[0..1]	[109..23]
NIFB_NOSS1 - FeMo cofactor biosynthesis protein NifB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nifB PE=3 SV=... gi\|97705 - gi\|97705\|pir\|\|A34443 nitrogen fixation protein nifB - Anabaena sp gi\|25335855 - pir\|\|AG1995 nitrogen fixation protein [imported] - Nostoc sp. (strain PCC 7120)	122.0	[0..1]	[107..367]
gi\|53688937 - gi\|53688937\|ref\|ZP_00345924.1\| COG0535: Predicted Fe-S oxidoreductases [Nostoc punctiforme PCC 73102...	122.0	[0..1]	[107..336]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIAVTSRDG REINQHFGHA ERFLIYEVDG GDARLVDERK IERYCTGESD HSQRAHILSS  60
   61 IAGALVGCRA LVCAQIGPGP LMELERLGLE AFTADGPIKA TLVELAKVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1p90A
Description:	The Three-dimensional Structure of the Core Domain of NafY from Azotobacter vinelandii determined at 1.8 resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nitrogenase activity	4.11687571138376	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	4.11687571138376	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors	2.91591221370455	bayes_pls_golite062009
catalytic activity	0.795398981330566	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: