YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997895, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997895, gi|....

Description	E-value	Query Range	Subject Range
gi\|23014580 - gi\|23014580\|ref\|ZP_00054389.1\| hypothetical protein Magn03009023 [Magnetospirillum magnetotacticum M...	454.0	[0..2]	[258..9]
gi\|78193149, gi\|... - gi\|78221894\|ref\|YP_383641.1\| NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase [Geobacter metall...	451.0	[0..1]	[265..1]
gi\|83310674, gi\|... - gi\|83310674\|ref\|YP_420938.1\| NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase [Magnetospirillum ...	450.0	[0..2]	[258..9]
DRAT_RHORU - NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase OS=Rhodospirillum rubrum GN=draT PE=1 SV=2	444.0	[0..2]	[259..11]
gi\|83575259, gi\|... - gi\|83592345\|ref\|YP_426097.1\| NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase [Rhodospirillum r...	444.0	[0..2]	[259..26]
draT2 - draT2 NAD+ ADP-ribosyltransferase 2729949:2730821 forward MW:32341	438.0	[0..2]	[258..28]
gi\|86573189, gi\|... - gi\|86750161\|ref\|YP_486657.1\| NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase [Rhodopseudomonas...	437.0	[0..2]	[258..23]
gi\|77691698, gi\|... - gi\|91976879\|ref\|YP_569538.1\| NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase [Rhodopseudomonas...	434.0	[0..2]	[258..20]
gi\|78494232, gi\|... - gi\|78494232\|ref\|ZP_00846461.1\| Dinitrogenase reductase ADP-ribosyltransferase [Rhodopseudomonas palu...	423.0	[0..2]	[258..59]
gi\|142412, gi\|21... - pir\|\|I39751 NAD-dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) - Azospirillum brasilens...	423.0	[0..4]	[258..29]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSGFNLCN LPPWVIASRH FNDNPHPLEV QGVRPANRFL FEKLDGIASA EERGTVFNDY  60
   61 MSVKFQLHHW QAQQTDTARK SLKNSYLRYL RGWMMD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSVEGAVLK GWVESRMGIV PTFHKARIGG IQSESYYTYV MDRTAGSKRT NAINSQLDIL  60
   61 YEFCQYEQAR RMAGERWITL YRGTFDADDY DVVEELGKRE KIVRFNNLVS FTSVEERAWE 120
  121 FGFTVWEIRA PLSKIFFFND LLPNSIMKGE GEYLVIGGEY RVRQIMCTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits