YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997859, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997859, gi|....

Description	E-value	Query Range	Subject Range
LOG4_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 S...	244.0	[0..3]	[196..15]
gi\|87240936 - gi\|87240936\|gb\|ABD32794.1\| Conserved hypothetical protein 730 [Medicago truncatula]	243.0	[0..2]	[192..14]
gi\|50926504, gi\|... - gi\|50926504\|ref\|XP_473199.1\| OSJNBb0061C13.8 [Oryza sativa (japonica cultivar-group)], gi\|32487858\|e...	242.0	[0..2]	[192..9]
gi\|78067070, gi\|... - gi\|78067070\|ref\|YP_369839.1\| hypothetical protein Bcep18194_A5601 [Burkholderia sp. 383], gi\|7796781...	238.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRICVFCGS SPGARPAYAG AARELGRLLA ATGIDLVYGG ASVGLMGILA RTVLDGGGRV  60
   61 TGVIPRMLEE KEIALTRLSD LRVVESMHER KALMAELSDG FIALPGGIGT IEEFVEVLTW 120
  121 LQLGIHGKPC GLLNSDGYYD RLLDFFDHMA AEGFIRPECR EAVLVDRDPA ALLKKMSLYR 180
  181 APVPDKVEWA LKMDNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	2a33A
Description:	X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.459062360506835	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: