YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997793, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997793, gi|....

Description	E-value	Query Range	Subject Range
gi\|37198129, gi\|... - gi\|37679386\|ref\|NP_933995.1\| molybdenum cofactor biosynthesis protein E [Vibrio vulnificus YJ016], g...	190.0	[0..2]	[127..5]
gi\|27362553, gi\|... - gi\|27366352\|ref\|NP_761880.1\| molybdenum cofactor biosynthesis protein E [Vibrio vulnificus CMCP6], g...	190.0	[0..2]	[127..5]
gi\|94501722, gi\|... - gi\|94501722\|ref\|ZP_01308236.1\| molybdenum cofactor biosynthesis protein E [Oceanobacter sp. RED65], ...	185.0	[0..2]	[127..4]
gi\|90327565, gi\|... - gi\|90411675\|ref\|ZP_01219685.1\| putative molybdenum cofactor biosynthesis protein E [Photobacterium p...	184.0	[0..1]	[126..1]
gi\|90439970, gi\|... - gi\|90579137\|ref\|ZP_01234947.1\| putative molybdenum cofactor biosynthesisprotein E [Vibrio angustum S...	184.0	[0..1]	[127..1]
gi\|91188618, gi\|... - gi\|91227354\|ref\|ZP_01261743.1\| molybdenum cofactor biosynthesis protein E [Vibrio alginolyticus 12G0...	182.0	[0..2]	[126..5]
gi\|197335622, gi... - gi\|197335622\|ref\|YP_002155706.1\| molybdopterin converting factor, subunit 2 [Vibrio fischeri MJ11], ... gi\|59479651, gi\|... - gi\|59711550\|ref\|YP_204326.1\| molybdopterin synthase, large subunit [Vibrio fischeri ES114], gi\|59479...	182.0	[0..1]	[126..1]
gi\|89073365, gi\|... - gi\|89073365\|ref\|ZP_01159889.1\| putative molybdenum cofactor biosynthesis protein E [Photobacterium s...	182.0	[0..1]	[127..1]
gi\|28807085, gi\|... - gi\|28898866\|ref\|NP_798471.1\| molybdenum cofactor biosynthesis protein E [Vibrio parahaemolyticus RIM... gi\|28807085 - gi\|28807085\|dbj\|BAC60355.1\| molybdenum cofactor biosynthesis protein E [Vibrio parahaemolyticus RIMD...	181.0	[0..2]	[126..5]
gi\|46912748, gi\|... - gi\|54308320\|ref\|YP_129340.1\| putative molybdenum cofactor biosynthesisprotein E [Photobacterium prof...	181.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIITDTPID PTSAYGLLSK GTSGSIVLHY AVVKQDAGNS APTACIDYRF DAGAIEELEA  60
   61 ISAELRQQWQ LEDVLLIRRE GCLGVGEIIS LAAASSPNSE DAFSACRHGI ARLKKMSTVH 120
  121 KREKFVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1nvjA
Description:	Molybdopterin synthase subunit MoaE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11092890710142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: