YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997745, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997745, gi|....

Description	E-value	Query Range	Subject Range
gi\|11528330 - gi\|11528330\|gb\|AAG37225.1\|AF298223_3 glutamine ABC transporter, ATP-binding subunit [Methanococcus m... gi\|45047352, gi\|... - gi\|45357792\|ref\|NP_987349.1\| amino acid ABC transporter ATP-binding protein [Methanococcus maripalud...	346.0	[0..2]	[243..1]
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	345.0	[0..2]	[241..10]
gi\|83595860 - gi\|83595860\|gb\|ABC25222.1\| amino acid ABC transporter, ATP-binding protein [uncultured marine bacter...	344.0	[0..3]	[243..14]
gi\|56420511, gi\|... - gi\|56420511\|ref\|YP_147829.1\| glutamine ABC transporter ATP-binding protein [Geobacillus kaustophilus...	343.0	[0..2]	[243..1]
gi\|194467497, gi... - gi\|92090286\|ref\|ZP_01275165.1\| ABC transporter related [Lactobacillus reuteri 100-23], gi\|91802944\|g...	343.0	[0..3]	[241..7]
GLNQ_GEOSE - Glutamine transport ATP-binding protein GlnQ OS=Geobacillus stearothermophilus GN=glnQ PE=2 SV=1	343.0	[0..2]	[243..1]
gi\|82724967, gi\|... - gi\|82747099\|ref\|ZP_00909599.1\| ATPas [Clostridium beijerincki NCIMB 8052], gi\|82724967\|gb\|EAP59716.1...	343.0	[0..2]	[241..1]
gi\|148530372, gi... - gi\|89091775\|ref\|ZP_01164743.1\| ATPas [Lactobacillus reuteri JCM 1112], gi\|89078406\|gb\|EAR57769.1\| AT... gi\|227070503, gi... - gi\|227364410\|ref\|ZP_03848500.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto... gi\|227531705, gi... - gi\|227531705\|ref\|ZP_03961754.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto...	343.0	[0..3]	[241..7]
gi\|55738561 - gb\|AAV62202.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococcus thermophilu... gi\|55738561, gi\|... - gi\|55822576\|ref\|YP_141017.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococc...	342.0	[0..2]	[241..5]
gi\|55736670, gi\|... - gi\|55820685\|ref\|YP_139127.1\| polar amino acid ABC uptake transporter ATP-binding protein [Streptococ... gi\|55736670 - gb\|AAV60312.1\| polar amino acid ABC uptake transporter ATP-binding protein [Streptococcus thermophil... gi\|116627491, gi... - gi\|62528355\|ref\|ZP_00389609.1\| COG1126: ABC-type polar amino acid transport system, ATPase component...	342.0	[0..2]	[241..5]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRLTGITK RFGSQTALAG LSLDMAEFKA LAVIGPSGGG KTTLLRVIGG LTAPDGGELE  60
   61 IDGERIGFDE ESLLAHRRRI GTVFQAYNLF PHLSALENIT LPLTRVHGIP QAEARDQALA 120
  121 LLERFQLAPH TAKRPAELSG GQQQRVAIAR AMAIRPRFLL LDEPTSALDP EMTAEVLDII 180
  181 MELRSEGRDI IMATHHMGFA RSVADRCLFV CDGVAAEEGP AAELFENPRS DKLRNFLAKV 240
  241 LKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.522879
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits