YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997712, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997712, gi|....

Description	E-value	Query Range	Subject Range
gi\|78222073, gi\|... - gi\|78222073\|ref\|YP_383820.1\| protein translocase subunit yajC [Geobacter metallireducens GS-15], gi\|...	135.0	[0..1]	[106..1]
gi\|83593100, gi\|... - gi\|83593100\|ref\|YP_426852.1\| protein translocase subunit yajC [Rhodospirillum rubrum ATCC 11170], gi... gi\|48764191 - ref\|ZP_00268743.1\| COG1862: Preprotein translocase subunit YajC [Rhodospirillum rubrum]	130.0	[0..1]	[105..9]
gi\|21231814, gi\|... - gi\|21231814\|ref\|NP_637731.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest... gi\|167732951, gi... - gi\|188991191\|ref\|YP_001903201.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. cam... gi\|66768060, gi\|... - gi\|66768060\|ref\|YP_242822.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest...	128.0	[0..2]	[105..6]
gi\|88918284, gi\|... - gi\|88935019\|ref\|ZP_01140657.1\| YajC [Geobacter uraniumreducens Rf4], gi\|88918284\|gb\|EAR37465.1\| YajC...	128.0	[0..1]	[105..1]
gi\|91781854, gi\|... - gi\|91781854\|ref\|YP_557060.1\| preprotein translocase subunit YajC [Burkholderia xenovorans LB400], gi... gi\|117991282, gi... - gi\|118038619\|ref\|ZP_01510023.1\| preprotein translocase, YajC subunit [Burkholderia phytofirmans PsJN...	124.0	[0..4]	[105..12]
gi\|134137951, gi... - gi\|67547644\|ref\|ZP_00425545.1\| YajC [Burkholderia vietnamiensis G4], gi\|67531079\|gb\|EAM27903.1\| YajC...	124.0	[0..2]	[105..4]
gi\|171992214, gi... - gi\|172059697\|ref\|YP_001807349.1\| preprotein translocase subunit YajC [Burkholderia ambifaria MC40-6]... gi\|118713625, gi... - gi\|170732042\|ref\|YP_001763989.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia MC0-3... gi\|46316116, gi\|... - gi\|78065285\|ref\|YP_368054.1\| preprotein translocase subunit YajC [Burkholderia sp. 383], gi\|77966030... gi\|194557266, gi... - gi\|84356832\|ref\|ZP_00981666.1\| COG1862: Preprotein translocase subunit YajC [Burkholderia cenocepaci... gi\|116646833, gi... - gi\|67665893\|ref\|ZP_00463150.1\| YajC [Burkholderia cenocepacia HI2424], gi\|67100573\|gb\|EAM17726.1\| Ya... gi\|171094702, gi... - gi\|171320043\|ref\|ZP_02909113.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria MEX-5],... gi\|67658219, gi\|... - gi\|67658219\|ref\|ZP_00455592.1\| YajC [Burkholderia cenocepacia AU 1054], gi\|67094060\|gb\|EAM11596.1\| Y... gi\|206561643, gi... - gi\|206561643\|ref\|YP_002232408.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia J2315... gi\|74017111, gi\|... - gi\|74017111\|ref\|ZP_00687736.1\| YajC [Burkholderia ambifaria AMMD], gi\|72610582\|gb\|EAO46529.1\| YajC [... gi\|170131962, gi... - gi\|170703129\|ref\|ZP_02893945.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria IOP40-1...	123.0	[0..2]	[105..4]
gi\|62257781 - gi\|62257781\|gb\|AAX77738.1\| unknown protein [synthetic construct]	123.0	[0..2]	[105..41]
gi\|77545572, gi\|... - gi\|77919489\|ref\|YP_357304.1\| preprotein translocase, YajC subunit [Pelobacter carbinolicus DSM 2380]...	122.0	[0..1]	[103..1]
gi\|110599885, gi... - gi\|222056532\|ref\|YP_002538894.1\| preprotein translocase, YajC subunit [Geobacter sp. FRC-32], gi\|221...	122.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGIAFAMAA PPGGAQAGGA MGAFQAILPL VFMFAIFYFL LIRPQQKKAK EHRALLDSLK  60
   61 RGDQVVTAGG MHGKVSGIDG DIVNLEIAPG VVIKITKGYV ASLKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.721246
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.625	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.571	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.557	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.554	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.520	N/A	N/A	b.34.2	SH3-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits