YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984598, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984598, gi|....

Description	E-value	Query Range	Subject Range
gi\|219668269, gi... - gi\|68206434\|ref\|ZP_00558622.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain:Rubrerythrin:Rubredoxin...	209.0	[0..4]	[165..220]
gi\|28204650, gi\|... - gi\|28212206\|ref\|NP_783150.1\| rubrerythrin [Clostridium tetani E88], gi\|28204650\|gb\|AAO37087.1\| rubre...	208.0	[0..3]	[168..5]
gi\|110552647, gi... - gi\|110603439\|ref\|ZP_01391516.1\| Rubrerythrin:Rubredoxin-type Fe(Cys)4 protein [Methanoculleus marisn...	200.0	[0..7]	[167..271]
gi\|110674466, gi... - gi\|110799819\|ref\|YP_695522.1\| [Fe] hydrogenase [Clostridium perfringens ATCC 13124], gi\|110674466\|gb...	199.0	[0..3]	[168..523]
gi\|67915809, gi\|... - gi\|67937948\|ref\|ZP_00530478.1\| Rubrerythrin:Rubredoxin-type Fe(Cys)4 protein [Chlorobium phaeobacter...	199.0	[0..6]	[168..49]
gi\|110801841, gi... - gi\|110801841\|ref\|YP_698262.1\| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101], gi\|110...	199.0	[0..3]	[168..523]
gi\|7450400, gi\|5... - pir\|\|D75136 rubrerythrin PAB0598 - Pyrococcus abyssi (strain Orsay), gi\|5458316\|emb\|CAB49805.1\| rr r... gi\|14521099, gi\|... - gi\|5458316\|emb\|CAB49805.1\| rr rubrerythrin [Pyrococcus abyssi GE5], gi\|14521099\|ref\|NP_126574.1\| rub...	199.0	[0..3]	[165..8]
gi\|7447637 - pir\|\|A69201 rubrerythrin - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15678781, gi\|... - gi\|2621845\|gb\|AAB85259.1\| rubrerythrin [Methanothermobacter thermautotrophicus str. Delta H], gi\|156...	198.0	[0..1]	[165..1]
gi\|118580382, gi... - gi\|71838354\|ref\|ZP_00678114.1\| Rubrerythrin [Pelobacter propionicus DSM 2379], gi\|71741255\|gb\|EAO364...	197.0	[0..2]	[167..4]
gi\|110606385, gi... - gi\|119720509\|ref\|YP_921004.1\| rubrerythrin [Thermofilum pendens Hrk 5], gi\|119525629\|gb\|ABL79001.1\| ...	197.0	[0..1]	[165..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETPKSIAD LKEAFAGESQ ANRKYLAFAK QADKEGFTQV AKLFRAAAEA ETIHAHNHLR  60
   61 ALGAIGATRE NLVEAVAGET HEFKNMYPQM IADAELEGAT EARRSFTFAN AVEKVHAALY 120
  121 QQALDTLGQS TEEFDYYVCP VCGHTVEREA PEKCEVCGAK GSVFFKVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1nnqA
Description:	rubrerythrin from Pyrococcus furiosus Pfu-1210814
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	0.965308156844803	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	0.965308156844803	bayes_pls_golite062009
binding	0.384332331442434	bayes_pls_golite062009
catalytic activity	0.176396048613815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: