YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984593, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984593, gi|....

Description	E-value	Query Range	Subject Range
gi\|13473052, gi\|... - gi\|14023800\|dbj\|BAB50405.1\| cyclohexadienyl dehydrogenase [Mesorhizobium loti MAFF303099], gi\|134730...	196.0	[0..4]	[290..2]
gi\|78512361, gi\|... - gi\|78699737\|ref\|ZP_00864226.1\| Prephenate dehydrogenase [Bradyrhizobium sp. BTAi1], gi\|78512361\|gb\|E...	195.0	[0..2]	[290..1]
gi\|15159711, gi\|... - gi\|15891328\|ref\|NP_357000.1\| prephenate dehydrogenase [Agrobacterium tumefaciens str. C58], gi\|15159... gi\|25331845 - pir\|\|G98282 tyrC protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon)	194.0	[0..1]	[290..1]
gi\|167366880, gi... - gi\|192293287\|ref\|YP_001993892.1\| Prephenate dehydrogenase [Rhodopseudomonas palustris TIE-1], gi\|192... tyrC - tyrC putative cyclohexadienyl dehydrogenase 5011818:5012759 forward MW:33536	192.0	[0..2]	[290..1]
gi\|27349648, gi\|... - gi\|27376507\|ref\|NP_768036.1\| cyclohexadienyl dehydrogenase [Bradyrhizobium japonicum USDA 110], gi\|2...	192.0	[0..2]	[290..1]
gi\|86283494, gi\|... - gi\|86359392\|ref\|YP_471284.1\| cyclohexadienyl dehydrogenase [Rhizobium etli CFN 42], gi\|86283494\|gb\|A...	192.0	[0..10]	[290..7]
gi\|116254072, gi... - gi\|116254072\|ref\|YP_769910.1\| cyclohexadienyl dehydrogenase [Rhizobium leguminosarum bv. viciae 3841...	191.0	[0..10]	[290..7]
gi\|23502836, gi\|... - gi\|23502836\|ref\|NP_698963.1\| cyclohexadienyl dehydrogenase [Brucella suis 1330], gi\|23348861\|gb\|AAN3... gi\|161619906, gi... - gi\|161619906\|ref\|YP_001593793.1\| cyclohexadienyl dehydrogenase [Brucella canis ATCC 23365], gi\|16133... gi\|254700626 - gi\|254700626\|ref\|ZP_05162454.1\| cyclohexadienyl dehydrogenase [Brucella suis bv. 5 str. 513]	190.0	[0..4]	[290..2]
gi\|90107771, gi\|... - gi\|90425757\|ref\|YP_534127.1\| cyclohexadienyl dehydrogenase [Rhodopseudomonas palustris BisB18], gi\|9...	187.0	[0..2]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSVPFIRR LAVIGVGLIG GSLARALRTA GAVGEIIGID RDEANLRQAA ELGVVDRAAA  60
   61 TVAEGVAGAD MVFLSVPVRA MAGVVREIAP HLAAGCIVTD GGSVKAEVVA ACDPLMPAGT 120
  121 CFVGGHPIAG TEHSGVGASF ATLYQGKRCI LTPAATTDRD ALATVARMWE AAGSEVVLMD 180
  181 PEKHDRVVAA ISHLPHMVAY ALVNAVEGYD RFEESILRYS AGGFRDFTRI ASSDPAMWRD 240
  241 IALMNREGVL EMMDHFAAYF GQLRSLVAAG DAEGLERFFR DSKESRDAIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	2g5cA
Description:	Crystal Structure of Prephenate Dehydrogenase from Aquifex aeolicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.16785883389468	bayes_pls_golite062009
oxidoreductase activity	1.95477050413	bayes_pls_golite062009
prephenate dehydrogenase activity	1.03016160419952	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.771153340292	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.66554302844944	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: