YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984581, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984581, gi|....

Description	E-value	Query Range	Subject Range
gi\|209901061, gi... - gi\|209901199\|ref\|YP_002286980.1\| hypothetical protein pKlebpneu12_p55 [Klebsiella pneumoniae], gi\|20... gi\|20086788 - gi\|20086788\|gb\|AAM10642.1\|AF481906_3 putative transposition helper protein [Salmonella enterica subs... gi\|157170702, gi... - gi\|157170702\|emb\|CAO82095.1\| putative transposition helper protein [Enterobacter cloacae], gi\|116263... gi\|167077401 - gi\|167077401\|gb\|ABZ10930.1\| helper protein [Pseudomonas aeruginosa] gi\|116263779 - gi\|116263779\|gb\|ABJ91194.1\| putative transposition helper protein [Escherichia coli]	230.0	[0..2]	[256..1]
gi\|51589426, gi\|... - gi\|51598162\|ref\|YP_072353.1\| transposase/IS protein [Yersinia pseudotuberculosis IP 32953], gi\|51596... gi\|194428978, gi... - gi\|75212684\|ref\|ZP_00712682.1\| COG1484: DNA replication protein [Escherichia coli B171], gi\|75209814... gi\|191167612, gi... - gi\|75230267\|ref\|ZP_00716764.1\| COG1484: DNA replication protein [Escherichia coli B7A], gi\|75229250\|... gi\|75241882, gi\|... - gi\|75242330\|ref\|ZP_00726092.1\| COG1484: DNA replication protein [Escherichia coli F11], gi\|75242274\|... gi\|162420419, gi... - gi\|77636315\|ref\|ZP_00798390.1\| COG1484: DNA replication protein [Yersinia pestis Angola], gi\|7763598... gi\|148872312, gi... - gi\|149192654\|ref\|YP_001293886.1\| transposase/IS protein [Yersinia pestis CA88-4125], gi\|148872312\|gb... gi\|145212195, gi... - gi\|145601115\|ref\|YP_001165191.1\| transposase/IS protein [Yersinia pestis Pestoides F], gi\|145600970\|... gi\|165988896, gi... - gi\|166012191\|ref\|ZP_02233089.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165920333, gi... - gi\|165927719\|ref\|ZP_02223551.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|166961246, gi... - gi\|167422993\|ref\|ZP_02314746.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|166207895, gi... - gi\|166214643\|ref\|ZP_02240678.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|194424273, gi... - gi\|83587629\|ref\|ZP_00926256.1\| COG1484: DNA replication protein [Escherichia coli 101-1], gi\|1944367... gi\|167466871, gi... - gi\|167471023\|ref\|ZP_02335727.1\| putative transposition helper protein [Yersinia pestis FV-1], gi\|167... gi\|167056261, gi... - gi\|167427151\|ref\|ZP_02318904.1\| putative transposition helper protein [Yersinia pestis biovar Mediae... gi\|186696687, gi... - gi\|186897383\|ref\|YP_001874495.1\| transposase/IS protein [Yersinia pseudotuberculosis PB1/+], gi\|1868... gi\|14594863, gi\|... - gi\|83404856\|ref\|YP_424870.1\| transposase/IS protein [Escherichia coli], gi\|83404810\|ref\|YP_424824.1\|... gi\|170122632, gi... - gi\|170769072\|ref\|ZP_02903525.1\| IS100 transposase orfB [Escherichia albertii TW07627], gi\|170768851\|... gi\|5420123, gi\|4... - gi\|5420123\|emb\|CAB46598.1\| IS100 transposase [Yersinia pseudotuberculosis], gi\|49658931\|emb\|CAF28558... gi\|195183302 - gi\|195183302\|dbj\|BAG66841.1\| Orf2 of IS100 [Escherichia coli O111:H-] gi\|4106647, gi\|1... - gi\|4106647\|emb\|CAA21402.1\| ORFB [Yersinia pestis], gi\|4106579\|emb\|CAA21334.1\| unnamed protein produc... gi\|215264284, gi... - gi\|215486212\|ref\|YP_002328643.1\| transposase/IS protein [Escherichia coli O127:H6 str. E2348/69], gi... gi\|40787978, gi\|... - gi\|40787978\|ref\|NP_955514.1\| transposase/IS protein [Yersinia pestis KIM], gi\|3883092\|gb\|AAC82752.1\|... gi\|5832425, gi\|4... - gi\|5832425\|emb\|CAB54879.1\| putative ATP-binding protein [Yersinia pestis CO92], gi\|40787861\|ref\|NP_3... gi\|89103829, gi\|... - gi\|89105853\|ref\|ZP_01178366.1\| COG1484: DNA replication protein [Yersinia pestis biovar Orientalis s... gi\|108808547, gi... - gi\|108810101\|ref\|YP_654017.1\| transposase/IS protein [Yersinia pestis Antiqua], gi\|108810087\|ref\|YP_... gi\|108813817, gi... - gi\|229904878\|ref\|ZP_04519988.1\| transposase [Yersinia pestis Nepal516], gi\|229678193\|gb\|EEO74299.1\| ... gi\|110345167, gi... - gi\|110643575\|ref\|YP_671305.1\| transposase/IS protein [Escherichia coli 536], gi\|110643150\|ref\|YP_670...	228.0	[0..1]	[251..1]
gi\|77633603 - gi\|77633603\|ref\|ZP_00795726.1\| COG1484: DNA replication protein [Yersinia pestis Angola]	228.0	[0..1]	[251..10]
gi\|115348099, gi... - gi\|5834741\|emb\|CAB55239.1\| putative IS100 transposase [Yersinia pestis CO92], gi\|5834687\|emb\|CAB5518... gi\|6009454, gi\|3... - gi\|6009454\|dbj\|BAA84913.1\| orf78 [Escherichia coli], gi\|32470047\|ref\|NP_862989.1\| transposase/IS pro... gi\|229896930, gi... - gi\|229897024\|ref\|ZP_04512183.1\| transposase [Yersinia pestis Pestoides A], gi\|229897005\|ref\|ZP_04512... gi\|229900021, gi... - gi\|229900374\|ref\|ZP_04515507.1\| transposase [Yersinia pestis biovar Orientalis str. India 195], gi\|2... gi\|229695091, gi... - gi\|229897827\|ref\|ZP_04512981.1\| transposase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|22989... gi\|229903850, gi... - gi\|229904881\|ref\|ZP_04519990.1\| transposase [Yersinia pestis Nepal516], gi\|229904792\|ref\|ZP_04519902... gi\|165922826, gi... - gi\|165928414\|ref\|ZP_02224246.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|153997365, gi... - gi\|153997682\|ref\|ZP_02022777.1\| putative ATP-binding protein [Yersinia pestis CA88-4125], gi\|1539976... gi\|195182831 - gi\|195182831\|dbj\|BAG66403.1\| predicted transposase [Escherichia coli O111:H-] gi\|167401918, gi... - gi\|167402522\|ref\|ZP_02307975.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165989510, gi... - gi\|166011562\|ref\|ZP_02232460.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165937440, gi... - gi\|165940222\|ref\|ZP_02228752.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|110345576, gi... - gi\|110644723\|ref\|YP_672453.1\| transposase/IS protein [Escherichia coli 536], gi\|110643984\|ref\|YP_671... gi\|25299919, gi\|... - pir\|\|T14971 probable transposase - Yersinia pestis plasmid pMT1 and pCD1 insertion sequence, gi\|527... gi\|22127670, gi\|... - gi\|3883054\|gb\|AAC82714.1\| IS transposase [Yersinia pestis KIM], gi\|3822050\|gb\|AAC69770.1\| putative t... gi\|45441314, gi\|... - gi\|45478713\|ref\|NP_995568.1\| transposase/IS protein [Yersinia pestis biovar Microtus str. 91001], gi...	228.0	[0..1]	[251..2]
gi\|110343786, gi... - gi\|110642194\|ref\|YP_669924.1\| transposase/IS protein [Escherichia coli 536], gi\|110343786\|gb\|ABG7002... gi\|227885507, gi... - gi\|227885507\|ref\|ZP_04003312.1\| ATP-binding protein [Escherichia coli 83972], gi\|227837520\|gb\|EEJ479... gi\|191170250, gi... - gi\|75242823\|ref\|ZP_00726529.1\| COG1484: DNA replication protein [Escherichia coli F11], gi\|191170250...	228.0	[0..1]	[251..1]
gi\|26248359, gi\|... - gi\|26248359\|ref\|NP_754399.1\| transposase/IS protein [Escherichia coli CFT073], gi\|26108763\|gb\|AAN809... gi\|91211270, gi\|... - gi\|91211270\|ref\|YP_541256.1\| transposase/IS protein [Escherichia coli UTI89], gi\|91072844\|gb\|ABE0772...	227.0	[0..1]	[251..2]
gi\|108779650, gi... - gi\|108807737\|ref\|YP_651653.1\| transposase/IS protein [Yersinia pestis Antiqua], gi\|108779650\|gb\|ABG1...	227.0	[0..1]	[251..1]
gi\|78194990, gi\|... - gi\|78224472\|ref\|YP_386219.1\| transposase/IS protein [Geobacter metallireducens GS-15], gi\|78223992\|r...	227.0	[0..1]	[264..1]
gi\|221589259, gi... - gi\|98978968\|gb\|ABF59980.1\| ATP-binding protein [Escherichia coli], gi\|222104831\|ref\|YP_002539320.1\| ... gi\|75514029 - gi\|75514029\|ref\|ZP_00736359.1\| COG1484: DNA replication protein [Escherichia coli 53638] gi\|194358515, gi... - gi\|194447071\|ref\|YP_002039121.1\| IS100 transposase orfB [Salmonella enterica subsp. enterica serovar...	227.0	[0..1]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIQHQRMV TLCDDLKFLS VADVYTDLAD AAAKQESSYI DYLEQVLKAE NDVRQGRSRH  60
   61 TMAKLAGFPA IKTLEDYDFE FATGAPKQRI LDLSAMAFLE RRENVILLGP SGTGKTHLAI 120
  121 ALGYRATQCG VKVRFISAAD LMLQLESAQR QGRYKEVMRR SVLGPRLLII DEIGYLPFSE 180
  181 TQANLFFQVI AKRYETGSVI LTSNLSFGEW EQAFGGNTAL TSAMLDRLLH HAHVIQIRGD 240
  241 SYRLKEKRRA GILGQQLPTP QIDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits