YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997660, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997660, gi|....

Description	E-value	Query Range	Subject Range
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	265.0	[0..1]	[254..268]
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	257.0	[0..15]	[254..204]
gi\|78195239, gi\|... - gi\|78223984\|ref\|YP_385731.1\| histidine kinase [Geobacter metallireducens GS-15], gi\|78195239\|gb\|ABB3...	255.0	[0..2]	[254..316]
gi\|150017029, gi... - gi\|82745764\|ref\|ZP_00908274.1\| Response regulator receiver:ATP-binding region, ATPase-like:Histidine...	254.0	[0..1]	[253..411]
gi\|73668585, gi\|... - gi\|73668585\|ref\|YP_304600.1\| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...	251.0	[0..17]	[254..484]
gi\|85777247, gi\|... - gi\|86160736\|ref\|YP_467521.1\| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C], gi\|85777247\|gb\|...	251.0	[0..14]	[254..196]
gi\|20907888, gi\|... - gi\|21229307\|ref\|NP_635229.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	250.0	[0..15]	[254..324]
gi\|67931601, gi\|... - gi\|67931601\|ref\|ZP_00524760.1\| Response regulator receiver:ATP-binding region, ATPase-like:Histidine...	250.0	[0..4]	[254..858]
gi\|42523783, gi\|... - gi\|42523783\|ref\|NP_969163.1\| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100], gi\|3957...	250.0	[0..14]	[254..302]

Back

Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRSHTGEE ELRCRVQELE HRVTELTEAL DASNRELQTF SYSVSHDLRA PLTIIDGFAR  60
   61 ALMEDCVEQL DAQGQDYLKR IRIASQRMGN LINGLLNLSR IAREPLCSGT ANLSEMVRTI 120
  121 EMELRYLHPE RSVLFTIEDG VTAQGDRRML RTVMDNLLRN AWKFTVARDP AHISFGVCVQ 180
  181 EGKTAYFVKD DGAGFDMAFA DRLFIPFQRM HQGSEFEGVG IGLATAHRII QRHGGRIWAE 240
  241 AAPDAGATFY FTLTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits