YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997620, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997620, gi|....

Description	E-value	Query Range	Subject Range
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	185.0	[0..1]	[166..1]
gi\|114845237, gi... - gi\|167039852\|ref\|YP_001662837.1\| nitroreductase [Thermoanaerobacter sp. X514], gi\|166854092\|gb\|ABY92... gi\|242232222, gi... - gi\|242256267\|ref\|ZP_04801161.1\| nitroreductase [Thermoanaerobacter sp. X513], gi\|242232222\|gb\|EES345...	183.0	[0..1]	[166..1]
gi\|241885212, gi... - gi\|241902497\|ref\|ZP_04787231.1\| nitroreductase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|... gi\|76588082, gi\|... - gi\|76796578\|ref\|ZP_00778937.1\| Nitroreductase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765880...	182.0	[0..1]	[166..1]
gi\|20808224, gi\|... - gi\|20808224\|ref\|NP_623395.1\| nitroreductase [Thermoanaerobacter tengcongensis MB4], gi\|20516820\|gb\|A... gi\|20808224 - gi\|20808224\|ref\|NP_623395.1\| Nitroreductase [Thermoanaerobacter tengcongensis MB4]	180.0	[0..1]	[166..2]
gi\|78222292, gi\|... - gi\|78222292\|ref\|YP_384039.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78193547\|gb\|ABB313...	176.0	[0..1]	[167..1]
gi\|20905062, gi\|... - gi\|21226769\|ref\|NP_632691.1\| nitroreductase family protein [Methanosarcina mazei Go1], gi\|20905062\|g...	176.0	[0..2]	[166..8]
gi\|19917862, gi\|... - gi\|20092585\|ref\|NP_618660.1\| nitroreductase [Methanosarcina acetivorans C2A], gi\|19917862\|gb\|AAM0714...	173.0	[0..2]	[166..8]
gi\|219993268, gi... - gi\|89210024\|ref\|ZP_01188417.1\| Nitroreductase [Halothermothrix orenii H 168], gi\|89160364\|gb\|EAR8001...	172.0	[0..1]	[166..1]
gi\|72394932, gi\|... - gi\|73667770\|ref\|YP_303785.1\| nitroreductase [Methanosarcina barkeri str. Fusaro], gi\|72394932\|gb\|AAZ...	171.0	[0..2]	[166..8]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLEGILSR RSVRQFTDEP VSPAEVEDIL RAGAWAPSGL NNQPWRFAVV RDREKLRSLA  60
   61 GLTRYRHIVE GAPVSIAVFC DRDAMYHETK DHQAIGACLQ NMLLAAHALG LGAVWLGEIL 120
  121 KSAGQVRDLL GLPPNLELMA VIAVGRPSGV PHHSDRKPLS ELIVAEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: