YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997615, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997615, gi|....

Description	E-value	Query Range	Subject Range
gi\|15603103, gi\|... - gi\|15603103\|ref\|NP_246175.1\| O-sialoglycoprotein endopeptidase [Pasteurella multocida subsp. multoci...	240.0	[0..1]	[251..1]
tr\|D7HDL9\|D7HDL9... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae GN=tsaD PE=3 SV=1, tRNA N6-adenosi... gi\|229332108, gi... - gi\|229530335\|ref\|ZP_04419723.1\| endopeptidase [Vibrio cholerae 12129(1)], gi\|229332108\|gb\|EEN97596.1... gi\|150419451, gi... - gi\|75823731\|ref\|ZP_00753215.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|153214950, gi... - gi\|153214950\|ref\|ZP_01949733.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 1587], gi\|1241150...	236.0	[0..1]	[252..1]
gi\|66473506 - gi\|66473506\|ref\|NP_230172.2\| O-sialoglycoprotein endopeptidase [Vibrio cholerae O1 biovar eltor str....	236.0	[0..1]	[252..1]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	236.0	[0..1]	[251..1]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	236.0	[0..1]	[251..1]
gi\|68057326, gi\|... - gi\|68249127\|ref\|YP_248239.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 86-028NP], gi... gi\|144984027 - gi\|144984027\|gb\|EDJ91464.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae R3021] gi\|145630292 - gi\|145630292\|ref\|ZP_01786073.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 22.4-21]	236.0	[0..1]	[251..1]
gi\|75815669 - gi\|75815669\|ref\|ZP_00746166.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	235.0	[0..1]	[252..2]
GCP_HAEIN - Probable O-sialoglycoprotein endopeptidase OS=Haemophilus influenzae GN=gcp PE=3 SV=1 TSAD_HAEIN - tRNA N6-adenosine threonylcarbamoyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11...	235.0	[0..1]	[251..1]
TSAD_MANHA - tRNA N6-adenosine threonylcarbamoyltransferase OS=Mannheimia haemolytica GN=tsaD PE=1 SV=1	235.0	[0..1]	[251..1]
gi\|121590699, gi... - gi\|121590699\|ref\|ZP_01678032.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 2740-80], gi\|1215... gi\|124117986, gi... - gi\|153223809\|ref\|ZP_01954064.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MAK 757], gi\|1241... gi\|121629166, gi... - gi\|121728554\|ref\|ZP_01681576.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae V52], gi\|12162916... TSAD_VIBC3 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / C... gi\|229509005, gi... - gi\|229509005\|ref\|ZP_04398493.1\| endopeptidase [Vibrio cholerae B33], gi\|229353930\|gb\|EEO18864.1\| end... gi\|153819118, gi... - gi\|153819118\|ref\|ZP_01971785.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae NCTC 8457], gi\|12... gi\|229355877, gi... - gi\|229507132\|ref\|ZP_04396638.1\| endopeptidase [Vibrio cholerae BX 330286], gi\|229355877\|gb\|EEO20797.... TSAD_VIBCM - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tsaD... gi\|229606189, gi... - gi\|229606189\|ref\|YP_002876837.1\| endopeptidase [Vibrio cholerae MJ-1236], gi\|229368844\|gb\|ACQ59267.1... tr\|C6YK27\|C6YK27... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae MO10 GN=tsaD PE=3 SV=1 gi\|229519673, gi... - gi\|229519673\|ref\|ZP_04409116.1\| endopeptidase [Vibrio cholerae RC9], gi\|229344362\|gb\|EEO09337.1\| end... gi\|254850761, gi... - gi\|254850761\|ref\|ZP_05240111.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MO10], gi\|2548464...	235.0	[0..1]	[252..1]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVGIDIGS TATKAVVFDG MVRGRAVVPT GWEPREAGLR AFREALSSAG LREESVSRVV  60
   61 GTGYGRVSLP FSDQRVTEIS CHARGAWYLN PDTRAVIDIG GQDSKVILVS DDGSVSDFIM 120
  121 NDKCAAGTGR FLQVMAGILD LTLDELGSLA ASSEPVPLTS MCTVFAESEI IGLLAQGTPK 180
  181 GAIAAGIIDA IARRMEGLVG RLEAHEGITF TGGLATNGSI SGVIARRLGL SLHVPEDPQI 240
  241 VGALGAALIG CNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1huxA
Description:	Hydroxyglutaryl-CoA dehydratase component A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
kinase activity	1.55847742629362	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.41326067130808	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.32934175997085	bayes_pls_golite062009
acetate kinase activity	1.02147739254786	bayes_pls_golite062009
transferase activity	0.752605732921866	bayes_pls_golite062009
catalytic activity	0.666924658593345	bayes_pls_golite062009
protein binding	0.375225171889093	bayes_pls_golite062009
carbohydrate kinase activity	0.21579608499336	bayes_pls_golite062009
binding	0.186094217739223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: