YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997568, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997568, gi|....

Description	E-value	Query Range	Subject Range
gi\|110599983, gi... - gi\|222055312\|ref\|YP_002537674.1\| SpoVT/AbrB domain protein [Geobacter sp. FRC-32], gi\|221564601\|gb\|A...	105.0	[0..1]	[75..1]
gi\|7428908 - pir\|\|S74973 virulence associated protein vapB - Synechocystis sp. (strain PCC 6803) gi\|16329605, gi\|... - gi\|1652088\|dbj\|BAA17013.1\| virulence associated protein B [Synechocystis sp. PCC 6803], gi\|16329605\|...	104.0	[0..1]	[75..1]
gi\|88917197, gi\|... - gi\|88936066\|ref\|ZP_01141685.1\| virulence associated protein B [Geobacter uraniumreducens Rf4], gi\|88...	102.0	[0..1]	[74..1]
gi\|62129177, gi\|... - gi\|62181544\|ref\|YP_217961.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	102.0	[0..1]	[75..47]
gi\|112823951, gi... - gi\|23467533\|ref\|ZP_00123114.1\| COG4456: Virulence-associated protein and related proteins [Haemophil...	101.0	[0..3]	[75..5]
gi\|45601739, gi\|... - gi\|45658496\|ref\|YP_002582.1\| putative virulence-associated protein [Leptospira interrogans serovar C...	100.0	[0..1]	[73..1]
gi\|24213702, gi\|... - gi\|24213702\|ref\|NP_711183.1\| virulence associated protein B [Leptospira interrogans serovar Lai str....	99.0	[0..1]	[73..1]
gi\|106890400, gi... - gi\|106890400\|ref\|ZP_01357595.1\| SpoVT/AbrB-like [Roseiflexus sp. RS-1], gi\|106770870\|gb\|EAT27510.1\| ...	97.0	[0..1]	[73..15]
gi\|30138379, gi\|... - gi\|30248493\|ref\|NP_840563.1\| hypothetical protein NE0478 [Nitrosomonas europaea ATCC 19718], gi\|3013...	95.0	[0..1]	[75..1]
gi\|56414981, gi\|... - gi\|56414981\|ref\|YP_152056.1\| hypothetical protein SPA2902 [Salmonella enterica subsp. enterica serov... gi\|224584825, gi... - gi\|224584825\|ref\|YP_002638623.1\| hypothetical protein (associated with virulence) [Salmonella enteri... gi\|197363910, gi... - gi\|197363910\|ref\|YP_002143547.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri...	95.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAKIFQNG QSQAVRLPKE FRFEDSEVFI KKSGNVVQLI PRSDSWNSLF GSLKKFSRDF  60
   61 MSERIQPELD KRDGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits