YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997558, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997558, gi|....

Description	E-value	Query Range	Subject Range
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	220.0	[0..5]	[246..137]
gi\|7433883 - pir\|\|F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus horikoshii gi\|3258282, gi\|1... - gi\|3258282\|dbj\|BAA30965.1\| 381aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591592\|...	219.0	[0..1]	[247..134]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	218.0	[0..1]	[247..131]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	218.0	[0..1]	[247..135]
gi\|110550631, gi... - gi\|126178638\|ref\|YP_001046603.1\| glycosyl transferase, group 1 [Methanoculleus marisnigri JR1], gi\|1...	214.0	[0..8]	[249..108]
gi\|110669405, gi... - gi\|110669405\|ref\|YP_659216.1\| hexosyltransferase; glycosyltransferase [Haloquadratum walsbyi DSM 167...	214.0	[0..1]	[245..130]
gi\|48840219, gi\|... - gi\|73667788\|ref\|YP_303803.1\| mannosyltransferase [Methanosarcina barkeri str. Fusaro], gi\|72394950\|g...	213.0	[0..2]	[246..101]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	212.0	[0..1]	[247..133]
gi\|82403260, gi\|... - gi\|82498797\|ref\|ZP_00884253.1\| LPS glycosyltransferase [Caldicellulosiruptor saccharolyticus DSM 890...	212.0	[0..1]	[247..133]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEALEDTRR RDTLAVLRDA AAVAAFHKCV RCRVLDHHPS LAETMAVIPQ GVELPGEEFD  60
   61 WGNERFDRGE FVFFLPAGLR PVKNAAFALG PLAELHREEP RVRFLLAGPV LDREYGAATL 120
  121 EAIDCHPFAR YLGEVGRDAI GALFRRADAV INSSTFEGGM ANSVLEALAF GKPVLASYID 180
  181 GNRSVVKEGT TGFLFRGERE FLDRARDLLR NPALGRRLGE QGRELVRERF SPGREAEAYL 240
  241 ELYRRITGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits