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View Structure Prediction Details

Protein: LIPB_GEOSL
Organism: Geobacter sulfurreducens PCA
Length: 227 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIPB_GEOSL.

Description E-value Query
Range		 Subject
Range
LIPB_VIBVY - Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1
 224.0 [0..2] [207..14]
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus GN=lipB PE=3 SV=1
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=lipB PE=3 SV=1
 224.0 [0..2] [207..14]
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=lipB PE=3 SV=...
 221.0 [0..2] [202..14]
gi|46120087, gi|... - gi|67920271|ref|ZP_00513791.1| Lipoate-protein ligase B [Crocosphaera watsonii WH 8501], gi|67857755...
 216.0 [0..2] [196..21]
LIPB_PSEU2 - Octanoyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lipB PE=3 SV=1
 214.0 [0..1] [200..13]
LIPB_NOSP7 - Octanoyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lipB PE=3 SV=1
 214.0 [0..1] [205..20]
LIPB_ANAVT - Octanoyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lipB PE=3 SV=2
 213.0 [0..1] [198..20]
LIPB_NOSS1 - Octanoyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lipB PE=3 SV=1
gi|25349507 - pir||AB2204 lipoate-protein ligase B [imported] - Nostoc sp. (strain PCC 7120)
 213.0 [0..1] [198..20]
LIPB_PSEF5 - Octanoyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=lipB PE=3 SV=1
 213.0 [0..1] [200..13]
gi|67154146, gi|... - gi|67154146|ref|ZP_00415891.1| Lipoate-protein ligase B [Azotobacter vinelandii AvOP], ref|ZP_000929...
LIPB_AZOVD - Octanoyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=lipB PE=3 SV=1
 213.0 [0..1] [205..13]

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Predicted Domain #1
Region A:
Residues: [1-227] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYAEAFALQ ERLAADVAAG RAEETLLLLE HPPVYTLGRR GDGGSLPDPS VRPVEINRGG  60
   61 DVTWHGPGQL VGYPILDLGC RGRDLHRYLR FLEQVLMDAA ASLGVQAWRV AGRTGIWTEG 120
  121 GKLASIGVGV RRWVTMHGFA LNICNDLAPF SRIHPCGIVG CPVTTLSREA GRAITVAEAK 180
  181 AAVAAPFAGL PADALPEQPR DAVQPSSCDD VHAPSTTSRR PPCPLTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.045757
Match: 1w66A
Description: Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-oxygen bonds 3.33073922220594 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 3.33073922220594 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 3.33034630936933 bayes_pls_golite062009
ligase activity 3.05852492533937 bayes_pls_golite062009
catalytic activity 2.36416267096403 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle