YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997511, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997511, gi|....

Description	E-value	Query Range	Subject Range
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	144.0	[0..1]	[165..1]
gi\|78195763, gi\|... - gi\|78224508\|ref\|YP_386255.1\| CheW protein [Geobacter metallireducens GS-15], gi\|78195763\|gb\|ABB33530...	144.0	[0..1]	[166..1]
gi\|63254746, gi\|... - gi\|66044039\|ref\|YP_233880.1\| CheW-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325474...	141.0	[0..1]	[165..1]
gi\|71556924, gi\|... - gi\|71736371\|ref\|YP_273085.1\| chemotaxis protein CheW [Pseudomonas syringae pv. phaseolicola 1448A], ...	141.0	[0..1]	[166..1]
gi\|49081072 - gi\|49081072\|gb\|AAT50090.1\| PA1464 [synthetic construct]	137.0	[0..7]	[165..3]
gi\|150964555, gi... - gi\|94415031\|ref\|ZP_01294880.1\| hypothetical protein PaerP_01003139 [Pseudomonas aeruginosa PA7], gi\|...	137.0	[0..7]	[165..3]
gi\|83647830, gi\|... - gi\|83647830\|ref\|YP_436265.1\| chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396], ...	137.0	[0..1]	[165..1]
gi\|11277547, gi\|... - gi\|3721576\|dbj\|BAA33555.1\| CheW [Pseudomonas aeruginosa], pir\|\|T46620 chemotaxis protein cheW [impor... gi\|32041508, gi\|... - gi\|32041508\|ref\|ZP_00139091.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|9947417, gi\|1... - gi\|9947417\|gb\|AAG04853.1\|AE004576_2 probable purine-binding chemotaxis protein [Pseudomonas aerugino... gi\|107100898 - gi\|107100898\|ref\|ZP_01364816.1\| hypothetical protein PaerPA_01001928 [Pseudomonas aeruginosa PACS2] gi\|84328379, gi\|... - gi\|84328379\|ref\|ZP_00976386.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|194545547, gi... - gi\|84321854\|ref\|ZP_00970207.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|218892663, gi... - gi\|218892663\|ref\|YP_002441532.1\| putative purine-binding chemotaxis protein [Pseudomonas aeruginosa ...	137.0	[0..7]	[165..3]
gi\|83589593, gi\|... - gi\|83589593\|ref\|YP_429602.1\| CheW protein [Moorella thermoacetica ATCC 39073], gi\|83572507\|gb\|ABC190...	137.0	[0..17]	[162..8]
tr\|Q888V5\|Q888V5... - Chemotaxis protein CheW OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cheW-1 PE=4 SV=1 gi\|28851368, gi\|... - gi\|28868131\|ref\|NP_790750.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213970200, gi... - gi\|213970200\|ref\|ZP_03398331.1\| chemotaxis protein CheW [Pseudomonas syringae pv. tomato T1], gi\|213...	137.0	[0..1]	[165..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLPTLSTG SATASTPLQV VVFSVGSEEY CFEILKVREV IRTVPITAVP SAPPHVEGII  60
   61 NLRGAVVPII DFRKRFNITG ECTVDESEKV VIVAAAGSTT VGFTVDALSQ VLKVPREAVS 120
  121 TPPTGVSDQG GEAITGVASM GDRLIIVLDI ERLFSEDELT NLTGVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits