YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984395, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984395, gi|....

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	132.0	[0..2]	[131..266]
gi\|38639431 - gi\|38639431\|gb\|AAR25848.1\| 17.5 kDa class I heat shock protein [Carica papaya]	131.0	[0..6]	[131..23]
gi\|46371976 - gi\|46371976\|gb\|AAS90623.1\| putative low molecular weight heat shock protein [uncultured soil bacteri...	131.0	[0..3]	[130..19]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	129.0	[0..6]	[131..23]
gi\|83776798 - gi\|83776798\|gb\|ABC46712.1\| 17.5 kDa class I HSP [Arachis hypogaea]	128.0	[0..9]	[131..14]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	128.0	[0..6]	[131..13]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	127.0	[0..4]	[131..25]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	126.0	[0..17]	[131..41]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNSLTERN EERNVQPREE TRSNERYIRP AVNIIETEEG LVLTADIPGA AKETLDVNVE  60
   61 KGILTISAPV SHEMPGTTAY REFELASYYR QFSIPESLDH EKAKAEYVNG ILTLRVPKAE 120
  121 AAKPKRIAVQ VG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: