YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997477, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997477, gi|....

Description	E-value	Query Range	Subject Range
gi\|83311960, gi\|... - gi\|83311960\|ref\|YP_422224.1\| anthranilate/para-aminobenzoate synthase component II [Magnetospirillum...	225.0	[0..1]	[190..1]
gi\|85722760, gi\|... - gi\|85859669\|ref\|YP_461871.1\| anthranilate synthase component II [Syntrophus aciditrophicus SB], gi\|8...	224.0	[0..1]	[190..1]
gi\|46201429 - gi\|46201429\|ref\|ZP_00055031.2\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Magn...	223.0	[0..1]	[186..1]
gi\|72120121, gi\|... - gi\|73542708\|ref\|YP_297228.1\| anthranilate synthase component II [Ralstonia eutropha JMP134], gi\|7212...	222.0	[0..1]	[189..17]
gi\|48845510, gi\|... - gi\|78223697\|ref\|YP_385444.1\| anthranilate synthase component II [Geobacter metallireducens GS-15], g...	222.0	[0..1]	[189..1]
gi\|111612806, gi... - gi\|111612806\|ref\|ZP_01399890.1\| glutamine amidotransferase of anthranilate synthase [Verminephrobact...	222.0	[0..2]	[186..61]
gi\|56477813, gi\|... - gi\|56477813\|ref\|YP_159402.1\| anthranilate synthase (component II) [Aromatoleum aromaticum EbN1], gi\|...	222.0	[0..1]	[186..1]
gi\|255662132, gi... - gi\|83720076\|ref\|YP_443417.1\| anthranilate synthase component II [Burkholderia thailandensis E264], g... gi\|167582462 - gi\|167582462\|ref\|ZP_02375336.1\| anthranilate synthase component II [Burkholderia thailandensis TXDOH...	222.0	[0..1]	[189..1]
gi\|77965841, gi\|... - gi\|78065096\|ref\|YP_367865.1\| anthranilate synthase component II [Burkholderia sp. 383], gi\|77965841\|...	222.0	[0..1]	[186..1]
gi\|2983181, gi\|1... - gi\|2983181\|gb\|AAC06781.1\| anthranilate synthase component II [Aquifex aeolicus VF5], gi\|15606008\|ref... gi\|7436747 - pir\|\|E70349 anthranilate synthase component II - Aquifex aeolicus	222.0	[0..2]	[188..3]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLMIDNYDS FTFNIVQYFG ELGEDVRVFR NDGITLDEIE ALAPRRLVIS PGPCSPEEAG  60
   61 ISVAAIRHFA GKIPILGVCL GHQSIGAAFG GTVVRSSTLM HGKTSPIHHN GQGLFRGLPN 120
  121 PFNATRYHSL VVERASLPDC LEITAWVEEG EIMGLAHREL PVWGVQFHPE SILTEGGMDL 180
  181 LRNFLEITRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1qdlB
Description:	Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	4.48164623771604	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
ligase activity	1.77692713123297	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.628648036096965	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: