YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPA_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|67925738, gi\|... - gi\|67925738\|ref\|ZP_00519045.1\| Tryptophan synthase, alpha chain [Crocosphaera watsonii WH 8501], gi\|...	332.0	[0..1]	[262..1]
gi\|17133948, gi\|... - gi\|17232303\|ref\|NP_488851.1\| tryptophan synthase subunit alpha [Nostoc sp. PCC 7120], gi\|17133948\|db... gi\|25291896 - pir\|\|AC2407 tryptophan synthase alpha chain [imported] - Nostoc sp. (strain PCC 7120)	330.0	[0..1]	[262..1]
gi\|186464184, gi... - gi\|23128273\|ref\|ZP_00110124.1\| COG0159: Tryptophan synthase alpha chain [Nostoc punctiforme PCC 7310...	329.0	[0..1]	[262..1]
TRPA_SYNP2 - Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA P...	328.0	[0..1]	[262..1]
TRPA1_ARATH - Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2	324.0	[0..4]	[264..13]
TRPA_ANAVT - Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 S...	322.0	[0..1]	[262..1]
TRPA_PSEPF - Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpA PE=3 SV=1	320.0	[0..1]	[263..1]
TRPA_PSEU2 - Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpA PE=3 SV=...	320.0	[0..1]	[264..1]

Back

Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIAGTFAE LKHNSRKALV TFITAGDPDL AATEALIPLL AESGADIVEL GVPFSDPMAD  60
   61 GPTIQLSSER ALAAGTTLPK ILDMVRRVRT RCQVPIVLMG YYNPILIHGL ERFAADASAA 120
  121 GVDGVLLVDL PPEEAAEFKA CADRHGLDVI FLLTPTSDEG RIRKVARQAR GFVYYVSVTG 180
  181 VTGARSGVEA SVSSNVAAIR EAITVPVVVG FGISTPDQAA QVAASADGVV VGSAIVKLFE 240
  241 RFTAAELGRE VATFVSALRE AIGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.39794
Match:	2ekcA
Description:	No description for 2ekcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits