YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997437, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997437, gi|....

Description	E-value	Query Range	Subject Range
gi\|23099450, gi\|... - gi\|23099450\|ref\|NP_692916.1\| putative monovalent cation/H+ antiporter subunit E [Oceanobacillus ihey...	162.0	[0..3]	[157..4]
gi\|68189865, gi\|... - gi\|69279609\|ref\|ZP_00614415.1\| Protein of unknown function DUF68 [Mesorhizobium sp. BNC1], gi\|681898...	162.0	[0..1]	[157..1]
MRPE_BACSU - Na(+)/H(+) antiporter subunit E OS=Bacillus subtilis GN=mrpE PE=1 SV=1 gi\|50812287, gi\|... - gi\|50812287\|ref\|YP_054591.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus subtilis s...	161.0	[0..2]	[157..3]
gi\|15613878, gi\|... - gi\|15613878\|ref\|NP_242181.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus halodurans... gi\|25345883 - pir\|\|C83814 Na+/H+ antiporter BH1315 [imported] - Bacillus halodurans (strain C-125)	160.0	[0..3]	[156..4]
gi\|154163172 - gi\|154163172\|gb\|ABS70477.1\| MrpE [synthetic construct] MRPE_BACPE - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus (strain OF4) GN=mrpE PE=1 SV=1 gi\|6650387 - gi\|6650387\|gb\|AAF21816.1\|AF097740_5 multiple resistance and pH regulation related protein E [Bacillu... MRPE_BACPF - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus GN=mrpE PE=1 SV=1	157.0	[0..3]	[157..4]
gi\|106772731, gi... - gi\|148656224\|ref\|YP_001276429.1\| putative monovalent cation/H+ antiporter subunit E [Roseiflexus sp....	157.0	[0..4]	[156..2]
gi\|90418823, gi\|... - gi\|90418823\|ref\|ZP_01226734.1\| Na+/H+ antiporter, MnhE subunit [Aurantimonas sp. SI85-9A1], gi\|90336... gi\|90418823, gi\|... - gi\|90418823\|ref\|ZP_01226734.1\| Na+/H+ antiporter, MnhE subunit [Aurantimonas sp. SI85-9A1], gi\|90336...	156.0	[0..1]	[157..1]
gi\|21241232, gi\|... - gi\|21241232\|ref\|NP_640814.1\| putative monovalent cation/H+ antiporter subunit E [Xanthomonas axonopo...	155.0	[0..6]	[156..17]
gi\|40796041 - gi\|40796041\|gb\|AAR91686.1\| putative cation efflux system protein [Sinorhizobium fredii]	153.0	[0..1]	[156..1]
gi\|69142386, gi\|... - gi\|92116587\|ref\|YP_576316.1\| putative monovalent cation/H+ antiporter subunit E [Nitrobacter hamburg...	153.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPFLANILL ALAWMALTGT YTAGGFFTGA LAGFFVLWIT RRGRGTTGYL TRVRAVAGFI  60
   61 AFFFRELVLA NLRVAHDILT PRHHMTPGIV AVPLDVESDL EVTVLATVIT LTPGTLSLHL 120
  121 TDDRRTLYVH AMYIDDPAVL VRGIKEGFER RVREVFR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.585027
Match:	PF01899.7
Description:	No description for PF01899.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.889	N/A	N/A	d.24.1	Pili subunits

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits