YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997436, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997436, gi|....

Description	E-value	Query Range	Subject Range
gi\|25522150, gi\|... - pir\|\|AB2689 Na+/H+ antiporter mnhF [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir... gi\|15155908, gi\|... - gi\|17934822\|ref\|NP_531612.1\| Na+/H+ antiporter [Agrobacterium tumefaciens str. C58], gi\|17739294\|gb\|...	81.0	[0..5]	[87..8]
gi\|85698762, gi\|... - gi\|85714315\|ref\|ZP_01045303.1\| potassium efflux system protein [Nitrobacter sp. Nb-311A], gi\|8569876...	80.0	[0..2]	[88..3]
gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g... gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g...	78.0	[0..3]	[87..10]
gi\|75676842, gi\|... - gi\|75676842\|ref\|YP_319263.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter winogra...	78.0	[0..3]	[88..4]
gi\|52004871, gi\|... - gi\|52787045\|ref\|YP_092874.1\| putative monovalent cation/H+ antiporter subunit F [Bacillus lichenifor...	77.0	[0..3]	[88..1]
gi\|119863700, gi... - gi\|119945096\|ref\|YP_942776.1\| monovalent cation/proton antiporter, pH regulation subunit F [Psychrom...	77.0	[0..3]	[88..1]
gi\|83368991, gi\|... - gi\|83368991\|ref\|ZP_00913850.1\| multicomponent K+:H+ antiporter subunit F [Rhodobacter sphaeroides AT...	76.0	[0..2]	[88..4]
gi\|91799480, gi\|... - gi\|92116586\|ref\|YP_576315.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter hamburg...	76.0	[0..3]	[88..4]
gi\|56180021, gi\|... - gi\|56461011\|ref\|YP_156292.1\| multisubunit Na+/H+ antiporter, MnhF subunit [Idiomarina loihiensis L2T...	76.0	[0..3]	[88..1]
gi\|30249857, gi\|... - gi\|30249857\|ref\|NP_841927.1\| putative monovalent cation/H+ antiporter subunit F [Nitrosomonas europa...	76.0	[0..2]	[88..4]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDAFIHYV ILPLLGGGIV LAFVRLVRGP SLPDRVVALD LMATLIIALS AAYAVATGQH  60
   61 AYLDAAIVLA LITFLGTVAF AYYLHRRDGG A

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.744727
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits