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View Structure Prediction Details

Protein: gi|39997433, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997433, gi|....

Description E-value Query
Range
Subject
Range
TPP4_ORYSJ - Probable trehalose-phosphate phosphatase 4 OS=Oryza sativa subsp. japonica GN=TPP4 PE=2 SV=1
176.0 [0..8] [247..93]
TPPD_ARATH - Probable trehalose-phosphate phosphatase D OS=Arabidopsis thaliana GN=TPPD PE=2 SV=1
175.0 [0..8] [247..96]
gi|162460268, gi... - gi|90200725|gb|ABD92780.1| sister of ramosa 3 [Zea mays], gi|162460268|ref|NP_001105814.1| sister of...
174.0 [0..8] [248..81]

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Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYLFSHAGL RDLRDFIDRS TLFAFDLDGT LAPIVSDPAG IMIPPDVHER LVRLNGTASV  60
   61 AVVTGRARVD AARHLGFAPR FLVGNHGAEG LPGADAAERE FIGLCRGWMT QLGELLPEGE 120
  121 GTGIVMEDKS ATLSLHYRNA PDRENAHQRI LAAVSRLLPA PRRVSGKLVE NLVPAAAPHK 180
  181 GDALRCIMRH LGCARALFVG DDVTDEDVFR LGDEAIFGIR VGNSGGSAAR YFIRGQDEMA 240
  241 PLLDEILAVL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.92340854382984 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle