YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984294, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984294, gi|....

Description	E-value	Query Range	Subject Range
gi\|56179681, gi\|... - gi\|56460671\|ref\|YP_155952.1\| Outer membrane protein and related peptidoglycan-associated (lipo)prote...	160.0	[0..1]	[185..21]
gi\|48861429, gi\|... - gi\|90022262\|ref\|YP_528089.1\| OmpA family protein [Saccharophagus degradans 2-40], gi\|89951862\|gb\|ABD...	157.0	[0..2]	[186..38]
gi\|77165990, gi\|... - gi\|77165990\|ref\|YP_344515.1\| OmpA/MotB [Nitrosococcus oceani ATCC 19707], gi\|76884304\|gb\|ABA58985.1\|...	157.0	[0..24]	[184..158]
gi\|77457448, gi\|... - gi\|77457448\|ref\|YP_346953.1\| OmpA/MotB [Pseudomonas fluorescens Pf0-1], gi\|77381451\|gb\|ABA72964.1\| p...	154.0	[0..26]	[187..76]
gi\|113527675, gi... - gi\|113868899\|ref\|YP_727388.1\| outer membrane protein peptidoglycan-associated(lipo)proteins [Ralston...	154.0	[0..1]	[186..1]
gi\|84623073, gi\|... - gi\|84623073\|ref\|YP_450445.1\| OmpA family protein [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|843... gi\|58425744, gi\|... - gi\|58581150\|ref\|YP_200166.1\| OmpA family protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|58425...	154.0	[0..2]	[186..42]
gi\|188992257, gi... - gi\|188992257\|ref\|YP_001904267.1\| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. ... gi\|21112502, gi\|... - gi\|21230892\|ref\|NP_636809.1\| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC... gi\|66574441, gi\|... - gi\|66769109\|ref\|YP_243871.1\| outer membrane protein [Xanthomonas campestris pv. campestris str. 8004...	152.0	[0..2]	[186..42]
gi\|113731424, gi... - gi\|167644153\|ref\|YP_001681816.1\| OmpA/MotB domain-containing protein [Caulobacter sp. K31], gi\|16734...	152.0	[0..2]	[185..33]
gi\|19704600, gi\|... - gi\|19714896\|gb\|AAL95461.1\| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 255...	151.0	[0..27]	[185..40]
gi\|78047093, gi\|... - gi\|78047093\|ref\|YP_363268.1\| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vesi...	151.0	[0..2]	[186..42]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVHATLLV AFSIACAAGC AKKELVVPEP AVVSAPAQLP ATETVAPPAT TIDAHESIAA  60
   61 TDIAEDRITP AGNATQASPL KIVYFDFDAW VLNGEAREIL AGNAEWLRKN PGVAVILEGH 120
  121 TDERGSDAYN LALGEQRAKS AMKYLQTLGI DAGRMTVVSY GEEKPAVEGH DESAWAGNRR 180
  181 VEFIPKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits