YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997400, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997400, gi|....

Description	E-value	Query Range	Subject Range
gi\|78222308, gi\|... - gi\|78222308\|ref\|YP_384055.1\| trehalose-phosphatase, putative [Geobacter metallireducens GS-15], gi\|7...	477.0	[0..5]	[262..3]
gi\|54022410, gi\|... - gi\|54022410\|ref\|YP_116652.1\| putative trehalose-6-phosphate phophatase [Nocardia farcinica IFM 10152...	60.0	[0..9]	[144..22]
gi\|85857979, gi\|... - gi\|85857979\|ref\|YP_460181.1\| alpha,alpha-trehalose-phosphate synthase [UDP-forming] / trehalose 6-ph...	58.0	[0..50]	[218..544]
gi\|67927530, gi\|... - gi\|67927530\|ref\|ZP_00520722.1\| Trehalose-phosphatase:HAD-superfamily hydrolase, subfamily IIB [Solib...	51.0	[0..8]	[149..20]
gi\|94984168, gi\|... - gi\|94984168\|ref\|YP_603532.1\| HAD family hydrolase [Deinococcus geothermalis DSM 11300], gi\|94554449\|...	51.0	[0..36]	[149..42]
gi\|120405061, gi... - gi\|90203065\|ref\|ZP_01205711.1\| HAD-superfamily hydrolase subfamily IIB [Mycobacterium vanbaalenii PY...	51.0	[0..4]	[137..179]
gi\|111017067, gi... - gi\|111017067\|ref\|YP_700039.1\| trehalose-phosphatase [Rhodococcus jostii RHA1], gi\|110816597\|gb\|ABG91...	51.0	[0..15]	[242..5]
OTSB_MYCLE - Trehalose-phosphate phosphatase OS=Mycobacterium leprae GN=otsB PE=3 SV=1 OTSB_MYCLE - Trehalose-phosphate phosphatase OS=Mycobacterium leprae (strain TN) GN=otsB PE=3 SV=1 gi\|221229607, gi... - gi\|221229607\|ref\|YP_002503023.1\| putative trehalose-6-phosphate phosphatase [Mycobacterium leprae Br...	49.0	[0..13]	[160..180]
gi\|253800419, gi... - gi\|253800419\|ref\|YP_003033420.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis... gi\|254552474 - gi\|254552474\|ref\|ZP_05142921.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|134151500, gi... - gi\|254365987\|ref\|ZP_04982032.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|215432342 - gi\|215432342\|ref\|ZP_03430261.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|254814341 - gi\|254814341\|ref\|ZP_05219342.1\| putative trehalose 6-phosphate phosphatase [Mycobacterium tuberculos... OTSB_MYCTA - Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=otsB PE... gi\|215428876 - gi\|215428876\|ref\|ZP_03426795.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|255095317 - gi\|255095317\|ref\|ZP_05324795.1\| putative trehalose 6-phosphate phosphatase [Mycobacterium tuberculos... gi\|218755150 - gi\|218755150\|ref\|ZP_03533946.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... OTSB_MYCBO - Trehalose-phosphate phosphatase OS=Mycobacterium bovis GN=otsB PE=3 SV=1 gi\|215447694 - gi\|215447694\|ref\|ZP_03434446.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|224991796, gi... - gi\|224991796\|ref\|YP_002646485.1\| putative trehalose 6-phosphate phosphatase [Mycobacterium bovis BCG... gi\|219559447 - gi\|219559447\|ref\|ZP_03538523.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... OTSB_MYCBP - Trehalose-phosphate phosphatase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=otsB PE=3 SV... gi\|76782756, gi\|... - gi\|76782756\|ref\|ZP_00769952.1\| COG1877: Trehalose-6-phosphatase [Mycobacterium tuberculosis F11], gi... gi\|81251887, gi\|... - gi\|81251887\|ref\|ZP_00876499.1\| COG1877: Trehalose-6-phosphatase [Mycobacterium tuberculosis C], gi\|2... gi\|215413271 - gi\|215413271\|ref\|ZP_03421960.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... gi\|215405392 - gi\|215405392\|ref\|ZP_03417573.1\| trehalose 6-phosphate phosphatase otsB2 [Mycobacterium tuberculosis ... OTSB_MYCBO - Trehalose-phosphate phosphatase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=otsB PE=... OTSB_MYCTU - Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis GN=otsB PE=1 SV=1 OTSB_MYCTO - Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=otsB PE... OTSB_MYCTU - Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=otsB PE...	49.0	[0..13]	[160..146]
gi\|145225565, gi... - gi\|89338218\|ref\|ZP_01190996.1\| HAD-superfamily hydrolase subfamily IIB [Mycobacterium flavescens PYR...	49.0	[0..12]	[138..149]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTDSLKRL WIFSFDRTLT AAGACYSKAR LHRVTRQFLE ELAALPGHRV AVLSSRPLDD  60
   61 LVSRVPIEGI YLGGSCGTEW HIPGGESMTL SGKPKDMLME TRDALLPTLR EVADLPGVEL 120
  121 EDRRWSAALH TQEANTKARQ TLFARLAAVL KGWRVALYRN TTMVEIQFLP EITMAFGAQA 180
  181 LCRFLGYRGD VVCAGSDEND ATALRWALNQ GGTALSLGRD PLVPGARPVV DVRSLARHVR 240
  241 DLAGIDEHHR TRMAGRRLCN AA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.74
Match:	1u02A
Description:	Crystal structure of trehalose-6-phosphate phosphatase related protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.80981499750491	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: