YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997352, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997352, gi|....

Description	E-value	Query Range	Subject Range
gi\|93353553, gi\|... - gi\|94309701\|ref\|YP_582911.1\| glycosyl transferase family protein [Ralstonia metallidurans CH34], gi\|...	162.0	[0..3]	[249..2]
gi\|84712720, gi\|... - gi\|84712720\|ref\|ZP_01020600.1\| putative transferase [Polaromonas naphthalenivorans CJ2], gi\|84695236...	161.0	[0..1]	[256..1]
gi\|34101538, gi\|... - gi\|34495683\|ref\|NP_899898.1\| beta-1,4- glucosyltransferase [Chromobacterium violaceum ATCC 12472], g...	159.0	[0..4]	[248..5]
gi\|165975879, gi... - gi\|165975879\|ref\|YP_001651472.1\| putative glycosyltransferase [Actinobacillus pleuropneumoniae serov... gi\|189914843, gi... - gi\|190149712\|ref\|YP_001968237.1\| UDP-glucose--lipooligosaccharideglucosyltransferase [Actinobacillus... gi\|126207903, gi... - gi\|126207903\|ref\|YP_001053128.1\| UDP-glucose--lipooligosaccharide glucosyltransferase [Actinobacillu... gi\|32035666 - gi\|32035666\|ref\|ZP_00135567.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Actin...	157.0	[0..1]	[249..1]
gi\|77972448 - gi\|77972448\|ref\|ZP_00828014.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	156.0	[0..2]	[248..5]
gi\|77958465 - gi\|77958465\|ref\|ZP_00822498.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	156.0	[0..2]	[257..5]
gi\|18762510 - gi\|18762510\|gb\|AAL78078.1\| glucosyl-transferase [Yersinia enterocolitica]	156.0	[0..2]	[253..5]
gi\|48869021, gi\|... - gi\|68249231\|ref\|YP_248343.1\| UDP-glucose--lipooligosaccharide glucosyltransferase [Haemophilus influ...	156.0	[0..1]	[246..1]
gi\|77961972 - gi\|77961972\|ref\|ZP_00825799.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	156.0	[0..2]	[257..5]
KDTX_SERMA - Lipopolysaccharide core biosynthesis glycosyltransferase KdtX OS=Serratia marcescens GN=kdtX PE=3 SV...	156.0	[0..2]	[253..5]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVSVYIIA YNEEQKIEPA LQSVTWADEI VVIDSFSTDR TAEIARKYTD KVIQVPFEGF  60
   61 GKLRNSAIAA TSHEWIFSLD TDERCTEEAK NEILAIIDSP DALDAYYVPR RNIFMGRWVK 120
  121 HSGWYPDYRQ PQLFRRGAQV FTDEVVHESF TTIGRVGHMK NAIWQIPFRN FEQMISKIDR 180
  181 YSTLGAAKMT AKGVRPGMGK ALFHALFAFF RMYILRLGIL DGWAGFVIAL YTFEGTFYRY 240
  241 AKQVEAARGW VMTRPEELER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
transferase activity	1.59927234362992	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.46439247968206	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	0.65875226012175	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.59538793794626	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.109123661808497	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: