YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997333, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997333, gi|....

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	201.0	[0..1]	[126..12]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	201.0	[0..1]	[126..1]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	197.0	[0..1]	[126..1]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	191.0	[0..2]	[126..3]
gi\|167037280, gi... - gi\|76795304\|ref\|ZP_00777677.1\| YjgF-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241883716, gi... - gi\|241903918\|ref\|ZP_04788633.1\| endoribonuclease L-PSP [Thermoanaerobacter brockii subsp. finnii Ako...	183.0	[0..1]	[123..1]
gi\|58177560, gi\|... - gi\|58177562\|pdb\|1XRG\|C Chain C, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-296...	181.0	[0..3]	[124..34]
gi\|167040525, gi... - gi\|167040525\|ref\|YP_001663510.1\| putative endoribonuclease L-PSP [Thermoanaerobacter sp. X514], gi\|1... gi\|242257729, gi... - gi\|242257729\|ref\|ZP_04802583.1\| endoribonuclease L-PSP [Thermoanaerobacter sp. X513], gi\|242230767\|g...	181.0	[0..1]	[123..1]
gi\|18313754, gi\|... - gi\|18313754\|ref\|NP_560421.1\| hypothetical protein PAE3003 [Pyrobaculum aerophilum str. IM2], gi\|1816...	181.0	[0..1]	[125..1]
gi\|77996096, gi\|... - gi\|78043981\|ref\|YP_361254.1\| endoribonuclease L-PSP family protein [Carboxydothermus hydrogenoforman...	180.0	[0..1]	[123..1]
gi\|134052882, gi... - gi\|88945249\|ref\|ZP_01148463.1\| YjgF-like protein [Desulfotomaculum reducens MI-1], gi\|88925122\|gb\|EA...	180.0	[0..2]	[124..4]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIVATEQA PKAIGPYSQA VRAGGFLFLS GQIPLDPATG EMVDGDITVQ TMRVMDNMAA  60
   61 VLAEAGLGFD AIVKTTIFLA DLADFAAVNG VYGSRFAAAP PARSTVEVKG LPRGALVEIE 120
  121 AIALCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	2dyyA
Description:	No description for 2dyyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits