YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984173, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984173, gi|....

Description	E-value	Query Range	Subject Range
gi\|24986119, gi\|... - gi\|26991084\|ref\|NP_746509.1\| anti-sigma-28 factor, FlgM [Pseudomonas putida KT2440], gi\|24986119\|gb\|... tr\|E4RB04\|E4RB04... - FlgM OS=Pseudomonas putida (strain BIRD-1) GN=flgM PE=4 SV=1 tr\|I7C3B2\|I7C3B2... - Anti-sigma-28 factor, FlgM OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5093 PE=4 SV=1 gi\|82737705, gi\|... - gi\|82737705\|ref\|ZP_00900551.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas putida F1...	86.0	[0..2]	[96..7]
gi\|66046717, gi\|... - gi\|66046717\|ref\|YP_236558.1\| anti-sigma-28 factor, FlgM [Pseudomonas syringae pv. syringae B728a], g...	85.0	[0..2]	[96..7]
tr\|Q885B0\|Q885B0... - Negative regulator of flagellin synthesis FlgM, putative OS=Pseudomonas syringae pv. tomato (strain ... gi\|28852369, gi\|... - gi\|28869129\|ref\|NP_791748.1\| negative regulator of flagellin synthesis FlgM, putative [Pseudomonas s... gi\|213927893, gi... - gi\|213967592\|ref\|ZP_03395740.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas syringae...	84.0	[0..2]	[96..7]
gi\|71736807, gi\|... - gi\|71736807\|ref\|YP_275573.1\| flagellin synthesis, negative regulator, FlgM, putative [Pseudomonas sy...	84.0	[0..2]	[96..7]
gi\|53691288, gi\|... - gi\|78355685\|ref\|YP_387134.1\| putative anti-sigma-28 factor, FlgM [Desulfovibrio desulfuricans subsp....	83.0	[0..1]	[100..1]
gi\|89075487, gi\|... - gi\|89075487\|ref\|ZP_01161898.1\| putative negative regulator of flagellin synthesis FlgM [Photobacteri...	83.0	[0..3]	[99..4]
gi\|85836109, gi\|... - gi\|86146162\|ref\|ZP_01064488.1\| polar flagellar FlgM [Vibrio sp. MED222], gi\|85836109\|gb\|EAQ54241.1\| ...	82.0	[0..3]	[99..24]
gi\|95111838 - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ... gi\|104782851, gi... - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ...	81.0	[0..2]	[96..7]
gi\|148875171, gi... - gi\|153829330\|ref\|ZP_01981997.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 623-... gi\|153825319, gi... - gi\|153825319\|ref\|ZP_01977986.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MZO-... gi\|183179558, gi... - gi\|183179558\|ref\|ZP_02957769.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MZO-... gi\|229369878, gi... - gi\|229607223\|ref\|YP_002877871.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MJ-... gi\|229341078, gi... - gi\|229522153\|ref\|ZP_04411570.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae TM 1... gi\|229519221, gi... - gi\|229519221\|ref\|ZP_04408664.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae RC9]... gi\|9656761, gi\|1... - gi\|9656761\|gb\|AAF95349.1\| negative regulator of flagellin synthesis FlgM, putative [Vibrio cholerae ... gi\|229513848, gi... - gi\|229513848\|ref\|ZP_04403310.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae TMA ... gi\|11346217 - pir\|\|B82105 probable negative regulator of flagellin synthesis FlgM VC2204 [imported] - Vibrio chole... gi\|229355224, gi... - gi\|229507719\|ref\|ZP_04397224.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae BX 3... gi\|254286487, gi... - gi\|254286487\|ref\|ZP_04961444.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae AM-1... gi\|227082328, gi... - gi\|227082328\|ref\|YP_002810879.1\| putative negative regulator of flagellin synthesis FlgM [Vibrio cho... gi\|75831292, gi\|... - gi\|75831292\|ref\|ZP_00760557.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75823922, gi\|... - gi\|75823922\|ref\|ZP_00753396.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75827498, gi\|... - gi\|75827498\|ref\|ZP_00756933.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75820899, gi\|... - gi\|75820899\|ref\|ZP_00750937.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|121726568, gi... - gi\|75816991\|ref\|ZP_00747447.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|121549538, gi... - gi\|121586272\|ref\|ZP_01676062.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 2740... gi\|153213629, gi... - gi\|153213629\|ref\|ZP_01948902.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 1587... gi\|153221228, gi... - gi\|153221228\|ref\|ZP_01952243.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MAK ... gi\|126512366, gi... - gi\|153817098\|ref\|ZP_01969765.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae NCTC... gi\|153820886, gi... - gi\|229512086\|ref\|ZP_04401565.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae B33]...	80.0	[0..3]	[99..7]
gi\|70731830, gi\|... - gi\|70731830\|ref\|YP_261572.1\| negative regulator of flagellin synthesis FlgM, putative [Pseudomonas f...	80.0	[0..2]	[96..7]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDTNPPVT TVNQVKGETS QAASGADARK TGAAGGQATD TVDLSRNAER LVKANATLRT  60
   61 MPDVRVEKVE ELKKQIAAGE YNVSARDVAE KMLISMRNGV TA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.39
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.699675068991044	bayes_pls_golite062009
protein binding	0.0143725384232812	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: