YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997200, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997200, gi|....

Description	E-value	Query Range	Subject Range
gi\|149905337, gi... - gi\|82744680\|ref\|ZP_00907195.1\| Radical-activating enzyme [Clostridium beijerincki NCIMB 8052], gi\|82...	212.0	[0..1]	[298..1]
gi\|117626444, gi... - gi\|117626444\|ref\|YP_859767.1\| putative pyruvate-formate lyase-activating enzyme [Escherichia coli AP...	211.0	[0..3]	[298..8]
gi\|26250358, gi\|... - gi\|26250358\|ref\|NP_756398.1\| putative pyruvate formate-lyase 3 activating enzyme [Escherichia coli C...	211.0	[0..3]	[298..8]
gi\|77918997, gi\|... - gi\|77918997\|ref\|YP_356812.1\| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM 238...	210.0	[0..4]	[298..21]
gi\|27461256 - gi\|27461256\|gb\|AAM54729.1\| glycerol dehydratase activator [Clostridium butyricum]	206.0	[0..4]	[297..6]
gi\|41351407, gi\|... - gi\|56476469\|ref\|YP_158058.1\| benzylsuccinate synthase activating enzyme [Aromatoleum aromaticum EbN1...	199.0	[0..2]	[298..1]
gi\|120597257, gi... - gi\|82742220\|ref\|ZP_00904920.1\| Radical-activating enzyme [Shewanella sp. W3-18-1], gi\|82720428\|gb\|EA... gi\|77814518, gi\|... - gi\|77814518\|ref\|ZP_00813777.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Radical SAM [Shewanella putref...	198.0	[0..4]	[298..9]
gi\|57158549, gi\|... - gi\|57640225\|ref\|YP_182703.1\| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis KOD...	198.0	[0..3]	[298..5]
gi\|120562257, gi... - gi\|120602028\|ref\|YP_966428.1\| glycyl-radical activating family protein [Desulfovibrio vulgaris subsp...	196.0	[0..2]	[292..1]
gi\|90104702, gi\|... - gi\|90422688\|ref\|YP_531058.1\| glycyl-radical activating protein [Rhodopseudomonas palustris BisB18], ...	194.0	[0..4]	[298..9]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDRGIVFNI QKYSISDGPG IRTTVFLKGC PASCWWCHNP ESQAPAPEMT LVEGRCLSCG  60
   61 ECARACPHGT AGRGQGREAA CLICGRCADA CPTGARRLAG TEMTVADVLA ALLKDRIFYE 120
  121 ESGGGATFSG GEPLCQPGFL KALLAGCRER GIRTAVDTGG FAPRDQFLEV ATAADLILYD 180
  181 LKLMDAERHR AVVGLDNRMV LDNLAALGAV HDTIWIRIPI IPGVNDDRAN LEATAALAAR 240
  241 TPGVRQVNLL PYHRTWHGKL RQLGRAGADD AIATPSRERM EELVRIFRAA GLTTIIGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	1e08A
Description:	[Fe]-hydrogenase/cytochrome c553 complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits