YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997168, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997168, gi|....

Description	E-value	Query Range	Subject Range
gi\|46197224, gi\|... - gi\|46199598\|ref\|YP_005265.1\| 5-methylcytosine-specific restriction enzyme A [Thermus thermophilus HB... gi\|55981629, gi\|... - gi\|55981629\|ref\|YP_144926.1\| hypothetical protein TTHA1660 [Thermus thermophilus HB8], gi\|55773042\|d...	112.0	[0..6]	[97..52]
gi\|125557379 - gi\|125557379\|gb\|EAZ02915.1\| hypothetical protein OsI_25053 [Oryza sativa Indica Group] gi\|115470783, gi... - gi\|50934449\|ref\|XP_476752.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|50509...	105.0	[0..2]	[97..149]
gi\|48845238, gi\|... - gi\|78222156\|ref\|YP_383903.1\| HNH endonuclease [Geobacter metallireducens GS-15], gi\|78193411\|gb\|ABB3...	104.0	[0..1]	[98..1]
gi\|39576494, gi\|... - gi\|42524285\|ref\|NP_969665.1\| hypothetical protein Bd2878 [Bdellovibrio bacteriovorus HD100], gi\|3957...	104.0	[0..1]	[97..29]
gi\|83577976, gi\|... - gi\|83595062\|ref\|YP_428814.1\| HNH endonuclease [Rhodospirillum rubrum ATCC 11170], gi\|83577976\|gb\|ABC...	103.0	[0..8]	[98..60]
gi\|76261178, gi\|... - gi\|76261178\|ref\|ZP_00768797.1\| HNH endonuclease [Chloroflexus aurantiacus J-10-fl], gi\|76163921\|gb\|E... gi\|53798330 - ref\|ZP_00358851.1\| COG1403: Restriction endonuclease [Chloroflexus aurantiacus] gi\|222526157, gi... - gi\|222526157\|ref\|YP_002570628.1\| HNH endonuclease [Chloroflexus sp. Y-400-fl], gi\|222450036\|gb\|ACM54...	102.0	[0..8]	[100..50]
gi\|86605206, gi\|... - gi\|86605206\|ref\|YP_473969.1\| HNH endonuclease domain-containing protein [Synechococcus sp. JA-3-3Ab]... gi\|86605206 - gi\|86605206\|ref\|YP_473969.1\| HNH endonuclease domain protein [Cyanobacteria bacterium Yellowstone A-...	102.0	[0..6]	[97..45]
gi\|88936376, gi\|... - gi\|88936376\|ref\|ZP_01141987.1\| HNH nuclease [Geobacter uraniumreducens Rf4], gi\|88916863\|gb\|EAR36071...	102.0	[0..1]	[99..1]
gi\|94556524, gi\|... - gi\|94986243\|ref\|YP_605607.1\| HNH endonuclease [Deinococcus geothermalis DSM 11300], gi\|94556524\|gb\|A...	102.0	[0..9]	[97..75]
gi\|91201720 - gi\|91201720\|emb\|CAJ74780.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	102.0	[0..4]	[96..82]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYFVVEVTD QEIRREKDKA RELRRSRWWQ TVISRRTCHW CGGDFPPEEL TMDHVVPIVR  60
   61 GGKSSRGNVV PACKECNNRK KYLLPLEWEE YLEKARNGGE Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits