YRC Public Data Repository - Protein Structure Prediction

Protein:	NADK_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADK_GEOSL.

Description	E-value	Query Range	Subject Range
PPNK_PHOLL - Probable inorganic polyphosphate/ATP-NAD kinase OS=Photorhabdus luminescens subsp. laumondii GN=ppnK... NADK_PHOLL - NAD kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) GN=na...	344.0	[0..2]	[284..6]
gi\|194540249, gi... - gi\|75857316\|ref\|ZP_00764932.1\| COG0061: Predicted sugar kinase [Vibrio sp. Ex25], gi\|254228625\|ref\|Z...	344.0	[0..1]	[284..1]
gi\|91190041, gi\|... - gi\|91225098\|ref\|ZP_01260320.1\| inorganic polyphosphate/ATP-NAD kinase [Vibrio alginolyticus 12G01], ...	344.0	[0..1]	[284..1]
gi\|238723826, gi... - gi\|77974738\|ref\|ZP_00830277.1\| COG0061: Predicted sugar kinase [Yersinia frederiksenii ATCC 33641], ...	344.0	[0..3]	[284..8]
gi\|238726851, gi... - gi\|77978424\|ref\|ZP_00833853.1\| COG0061: Predicted sugar kinase [Yersinia intermedia ATCC 29909], gi\|...	344.0	[0..3]	[284..8]
gi\|238714882, gi... - gi\|77958603\|ref\|ZP_00822634.1\| COG0061: Predicted sugar kinase [Yersinia bercovieri ATCC 43970], gi\|...	344.0	[0..3]	[284..8]
gi\|77963361, gi\|... - gi\|77963361\|ref\|ZP_00827171.1\| COG0061: Predicted sugar kinase [Yersinia mollaretii ATCC 43969], gi\|...	343.0	[0..3]	[284..8]
PPNK_VIBPA - Probable inorganic polyphosphate/ATP-NAD kinase OS=Vibrio parahaemolyticus GN=ppnK PE=3 SV=1 NADK_VIBPA - NAD kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nadK PE=3 SV=1 gi\|149748894, gi... - gi\|153837699\|ref\|ZP_01990366.1\| probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kin...	342.0	[0..1]	[284..1]
NADK_SHIBS - NAD kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=nadK PE=3 SV=1	341.0	[0..2]	[284..6]
NADK_ECO27 - NAD kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nadK PE=3 SV=1 NADK_ECOL6 - NAD kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nadK PE=3 SV=1 NADK_ECO45 - NAD kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nadK PE=3 SV=1 NADK_ECO81 - NAD kinase OS=Escherichia coli O81 (strain ED1a) GN=nadK PE=3 SV=1 NADK_ECOL5 - NAD kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nadK PE=3 SV=1 gi\|190908335, gi... - gi\|191171401\|ref\|ZP_03032950.1\| NAD(+) kinase [Escherichia coli F11], gi\|190908335\|gb\|EDV67925.1\| NA... PPNK_ECOL6 - Probable inorganic polyphosphate/ATP-NAD kinase OS=Escherichia coli O6 GN=ppnK PE=3 SV=1 NADK_ECOK1 - NAD kinase OS=Escherichia coli O1:K1 / APEC GN=nadK PE=3 SV=1 gi\|237706798, gi... - gi\|237706798\|ref\|ZP_04537279.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia sp. 3_2_53FAA], ... NADK_ECOUT - NAD kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=nadK PE=3 SV=1 sp\|B7UH63\|PPNK_ECO27 - Probable inorganic polyphosphate/ATP-NAD kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	341.0	[0..2]	[284..6]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIAIFAKV HDPRCQGVAS ELIAWLEARG LIPLVEAHLA RHLGGRQGIV PEDIPVLADM  60
   61 AVVLGGDGTL ISAARLIGSR QIPILGVNLG SLGFLTEITL DELYPVLESC LSGDFQVTER 120
  121 MMLTVSVERN GEEICSHRVL NDVVINKGAL ARIIDMETEV SGIRLTTYKA DGLIISTPTG 180
  181 STGYSLSANG PIVHPSLECI TITPICPHTL TNRPIVLESS SGVTVWLRSK DEDVYLTLDG 240
  241 QVGMELKCGD AVHVRRAAHR TRLVMSRSRN YFEVLRTKLK WGER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.221849
Match:	2an1A
Description:	Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits