YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997154, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997154, gi|....

Description	E-value	Query Range	Subject Range
gi\|34496373, gi\|... - gi\|34496373\|ref\|NP_900588.1\| C4-dicarboxylate transport system, permease small subunit [Chromobacter...	133.0	[0..5]	[158..2]
gi\|152964166, gi... - gi\|69289865\|ref\|ZP_00618875.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [K...	122.0	[0..1]	[158..25]
gi\|71908605, gi\|... - gi\|71908605\|ref\|YP_286192.1\| tripartite ATP-independent periplasmic transporter DctQ [Dechloromonas ...	121.0	[0..4]	[158..2]
gi\|27359634, gi\|... - gi\|27363518\|ref\|NP_759046.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	120.0	[0..1]	[152..11]
gi\|37679281, gi\|... - gi\|37679281\|ref\|NP_933890.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	119.0	[0..1]	[153..11]
gi\|23097697, gi\|... - gi\|23097697\|ref\|NP_691163.1\| C4-dicarboxylate transport system permease small protein [Oceanobacillu...	119.0	[0..3]	[159..2]
gi\|83309993, gi\|... - gi\|83309993\|ref\|YP_420257.1\| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticu...	119.0	[0..5]	[158..2]
gi\|25521475 - pir\|\|H97687 hypothetical 17.5K protein in avtA-selB intergenic region (o157a) [imported] - Agrobact... gi\|15157960, gi\|... - gi\|15889991\|ref\|NP_355672.1\| hypothetical protein AGR_C_4972 [Agrobacterium tumefaciens str. C58], g...	117.0	[0..1]	[160..62]
gi\|83577920, gi\|... - gi\|83595006\|ref\|YP_428758.1\| tripartite ATP-independent periplasmic transporter DctQ [Rhodospirillum... gi\|48766632 - ref\|ZP_00271182.1\| COG3090: TRAP-type C4-dicarboxylate transport system, small permease component [R...	117.0	[0..5]	[158..1]
gi\|74024549, gi\|... - gi\|89902943\|ref\|YP_525414.1\| tripartite ATP-independent periplasmic transporter DctQ [Rhodoferax fer...	117.0	[0..11]	[156..22]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLFGILSK AFMVVGGVAL LALVLLATGN VASRIGRAPF AGTYEIVSFL GAIVIAGALG  60
   61 HTQRRKDHIV VDILSERFPA PVKRLLDAVN YAVTCGLFGI AAWQVWVWGD KLRLSGELSE 120
  121 TLKLTYYPFV YVVAAGFGVL AGVLFIDCMK TVLRGKESEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits