YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997150, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997150, gi|....

Description	E-value	Query Range	Subject Range
gi\|67875716, gi\|... - gi\|67875716\|ref\|ZP_00504932.1\| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding domain:...	187.0	[0..3]	[179..414]
gi\|77683865, gi\|... - gi\|77683865\|ref\|ZP_00799307.1\| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Alkaliphilus metalli...	184.0	[0..2]	[179..414]
gi\|20806954 - gi\|20806954\|ref\|NP_622125.1\| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi... gi\|20515433, gi\|... - gi\|20806954\|ref\|NP_622125.1\| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxi...	182.0	[0..2]	[178..414]
gi\|109648069, gi... - gi\|68206093\|ref\|ZP_00558287.1\| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding domain:... gi\|89337082, gi\|... - gi\|89897634\|ref\|YP_521121.1\| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense Y51], ...	180.0	[0..2]	[178..414]
gi\|158141179, gi... - gi\|158320980\|ref\|YP_001513487.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro...	180.0	[0..2]	[179..414]
gi\|167036716, gi... - gi\|76796119\|ref\|ZP_00778487.1\| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermoanaerobacter e... gi\|167039436, gi... - gi\|167039436\|ref\|YP_001662421.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro... gi\|242230352, gi... - gi\|242258128\|ref\|ZP_04802960.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo...	179.0	[0..2]	[179..414]
gi\|4972238 - gi\|4972238\|emb\|CAB43933.1\| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]	179.0	[0..2]	[176..414]
gi\|25284484 - pir\|\|B97208 pyruvate ferredoxin oxidoreductase CAC2499 [imported] - Clostridium acetobutylicum gi\|15025520, gi\|... - gi\|15895764\|ref\|NP_349113.1\| pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824...	179.0	[0..3]	[180..415]
gi\|242229946, gi... - gi\|242258533\|ref\|ZP_04803322.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermo... gi\|114805431, gi... - gi\|167039047\|ref\|YP_001662032.1\| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing pro...	178.0	[0..2]	[178..414]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGEQLIIS GVGGQGILFV TRILAETAIR NGMPVMTSET HGMAQRGGVV ISHLKAGEFS  60
   61 SPLVRPGRAD GLLAMKEENI ALHRHFLRPG GWIVANASRV PAGLEGHLVH VIDADALALE 120
  121 IGSPQAVNLI LLGFALARLT DAGLFCSTHQ VIATIERRLG EKGALRAASL KALRLGMERA 180
  181 EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits