YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984031, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984031, gi|....

Description	E-value	Query Range	Subject Range
gi\|53759202, gi\|... - gi\|91776577\|ref\|YP_546333.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Me...	257.0	[0..4]	[255..14]
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	255.0	[0..4]	[255..12]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	254.0	[0..2]	[254..23]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	254.0	[0..4]	[255..12]
gi\|69163170, gi\|... - gi\|69953987\|ref\|ZP_00640869.1\| Prepilin peptidase [Shewanella frigidimarina NCIMB 400], gi\|69163170\|...	253.0	[0..3]	[255..15]
tr\|Q888U2\|Q888U2... - Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Pseudomonas syringae pv. tomato (s... gi\|28868144, gi\|... - gi\|28868144\|ref\|NP_790763.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato ...	251.0	[0..4]	[255..11]
gi\|28899300, gi\|... - gi\|28899300\|ref\|NP_798905.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio... gi\|28807524 - gi\|28807524\|dbj\|BAC60789.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio ...	251.0	[0..2]	[255..6]
gi\|71735543, gi\|... - gi\|71735543\|ref\|YP_273100.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseol...	251.0	[0..4]	[255..11]
gi\|46914732, gi\|... - gi\|54310291\|ref\|YP_131311.1\| putative leader peptidase PilD [Photobacterium profundum SS9], gi\|46914...	249.0	[0..2]	[254..6]
gi\|66044051, gi\|... - gi\|66044051\|ref\|YP_233892.1\| prepilin peptidase [Pseudomonas syringae pv. syringae B728a], gi\|632547...	249.0	[0..4]	[255..11]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPIVFYLF SFVLGAVVGS FLNVCIYRLP TGESVVFPPS RCTSCGTRIR PWDNIPILSW  60
   61 LILRGACRAC RAKISARYPL VELINGLLCL ALFLKFGP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2ozyA
Description:	No description for 2ozyA was found.

Predicted Domain #2

Region A:
Residues: [99-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTFAALFVF CSALVAISFI DLDHQIIPDV ISLPGIVLGF VLSFFLPWLG WLNSLIGIAA  60
   61 GGGSLLLVAW LYERLTGKEG MGGGDIKLLA MMGAFLGWRA VPFIIFASSL VGSVIGLTLM 120
  121 MLQKKDSKLA IPFGPFLALG ALLYIFFGKA IILWYLSIGA R

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.49485
Match:	PF01478.9
Description:	No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits