YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997128, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997128, gi|....

Description	E-value	Query Range	Subject Range
gi\|77380638, gi\|... - gi\|77456635\|ref\|YP_346140.1\| pilus assembly protein, PilO [Pseudomonas fluorescens Pf0-1], gi\|773806...	201.0	[0..2]	[193..17]
gi\|152986380, gi... - gi\|94415413\|ref\|ZP_01295254.1\| hypothetical protein PaerP_01002781 [Pseudomonas aeruginosa PA7], gi\|...	200.0	[0..2]	[193..17]
gi\|7465486, gi\|5... - pir\|\|S77728 type 4 fimbrial biogenesis protein PilO PA5042 [imported] - Pseudomonas aeruginosa, gi\|... gi\|15600235, gi\|... - gi\|9951332\|gb\|AAG08427.1\|AE004917_6 type 4 fimbrial biogenesis protein PilO [Pseudomonas aeruginosa ... gi\|107104142 - gi\|107104142\|ref\|ZP_01368060.1\| hypothetical protein PaerPA_01005215 [Pseudomonas aeruginosa PACS2] gi\|254244076, gi... - gi\|84323871\|ref\|ZP_00971938.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa 2192... gi\|218894141, gi... - gi\|218894141\|ref\|YP_002443010.1\| type 4 fimbrial biogenesis protein PilO [Pseudomonas aeruginosa LES...	199.0	[0..2]	[193..17]
gi\|49079420 - gi\|49079420\|gb\|AAT49890.1\| PA5042 [synthetic construct]	199.0	[0..2]	[193..17]
gi\|53726587, gi\|... - gi\|53726587\|ref\|ZP_00347626.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa UCBP... gi\|126170182, gi... - gi\|84317711\|ref\|ZP_00966149.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa C371...	198.0	[0..2]	[193..17]
gi\|71737284, gi\|... - gi\|71737284\|ref\|YP_272695.1\| type IV pilus biogenesis protein PilO [Pseudomonas syringae pv. phaseol... gi\|455331 - gi\|455331\|gb\|AAA93088.1\| membrane protein	195.0	[0..2]	[193..17]
gi\|63254379, gi\|... - gi\|66043672\|ref\|YP_233513.1\| pilus assembly protein, PilO [Pseudomonas syringae pv. syringae B728a],...	195.0	[0..2]	[193..17]
gi\|78049055, gi\|... - gi\|78049055\|ref\|YP_365230.1\| fimbrial assembly membrane protein [Xanthomonas campestris pv. vesicato...	194.0	[0..2]	[196..10]
gi\|78692406, gi\|... - gi\|78692406\|ref\|ZP_00856937.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-7], gi\|78508... gi\|113886712, gi... - gi\|82497273\|ref\|ZP_00882830.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-4], gi\|82404...	194.0	[0..2]	[196..10]
gi\|21109735, gi\|... - gi\|21244108\|ref\|NP_643690.1\| fimbrial assembly membrane protein [Xanthomonas axonopodis pv. citri st...	194.0	[0..2]	[196..10]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDARIEKLLK LPNKQKLALL AAILVVEGAA LYWGLYAPRQ KELTALRGKL EKLQTEVQEK  60
   61 TRIANNLPKL KKEYQQLQKD LENALTELPN QKEIPSLLTG ITSVGKGAGL DFLLFRPKGE 120
  121 VPKDFYAEVP VDISVSGSFY GVANFFTAVG NLPRIVNITN VSFTDIKPVG GKTTVKVNCL 180
  181 ATTFRFIEKK ETKDDKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	1uv7A
Description:	periplasmic domain of EpsM from Vibrio cholerae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits