YRC Public Data Repository - Protein Structure Prediction

Protein:	AROK_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROK_GEOSL.

Description	E-value	Query Range	Subject Range
AROK_PSYWF - Shikimate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=aroK PE=3 SV=1	155.0	[0..3]	[174..1]
AROK_ANAVT - Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroK PE=3 SV=1	155.0	[0..1]	[171..1]
AROK_NOSS1 - Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aroK PE=3 SV=1 gi\|25288026 - pir\|\|AI1961 shikimate kinase [imported] - Nostoc sp. (strain PCC 7120)	155.0	[0..1]	[171..1]
gi\|207089357 - gi\|207089357\|gb\|EDZ66629.1\| shikimate kinase [Nitrosococcus oceani AFC27] AROK_NITOC - Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroK PE=3 SV=1 gi\|224409703, gi... - gi\|254436246\|ref\|ZP_05049753.1\| shikimate kinase [Nitrosococcus oceani AFC27], gi\|224409703\|ref\|YP_0...	153.0	[0..8]	[175..4]
gi\|58002633, gi\|... - gi\|58040219\|ref\|YP_192183.1\| bifunctional shikimate kinase [Gluconobacter oxydans 621H], gi\|58002633...	151.0	[0..6]	[175..22]
gi\|114315454, gi... - gi\|114327280\|ref\|YP_744437.1\| 3-dehydroquinate synthase [Granulibacter bethesdensis CGDNIH1], gi\|114...	151.0	[0..6]	[175..50]
AROK_THICR - Shikimate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroK PE=3 SV=1	150.0	[0..10]	[175..6]
AROK_HALHL - Shikimate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=aroK PE=3 SV=1	150.0	[0..1]	[172..1]
gi\|94312198, gi\|... - gi\|94312198\|ref\|YP_585408.1\| shikimate kinase [Ralstonia metallidurans CH34], gi\|93356050\|gb\|ABF1013...	149.0	[0..8]	[172..36]
AROK_BURL3 - Shikimate kinase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383) GN... AROK_BURS3 - Shikimate kinase OS=Burkholderia sp. (strain 383) GN=aroK PE=3 SV=1	149.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPSDGRNV VLTGFMGTGK STVGKLLARR LGYRFSDLDA LIVERAGISI NEIFERYGEQ  60
   61 RFRELETEAI RSLGGVSGRV VATGGGAVIA PRNRVLLREA GLVVNLTASL EVILSRLKGD 120
  121 RERPLLKSNN TPEALAALMT ARENAYADAD LRIDTAGKSV EDVVTEIATF VREHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: