YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997106, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997106, gi|....

Description	E-value	Query Range	Subject Range
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	348.0	[0..2]	[239..13]
gi\|52784220, gi\|... - gi\|52784220\|ref\|YP_090049.1\| hypothetical protein BLi00398 [Bacillus licheniformis ATCC 14580], gi\|5...	348.0	[0..1]	[239..1]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	346.0	[0..1]	[239..1]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	342.0	[0..2]	[239..21]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	341.0	[0..2]	[239..22]
gi\|148654949, gi... - gi\|148654949\|ref\|YP_001275154.1\| spermidine/putrescine ABC transporter ATPase subunit [Roseiflexus s...	340.0	[0..1]	[239..1]
POTA_CHRVO - Spermidine/putrescine import ATP-binding protein PotA OS=Chromobacterium violaceum (strain ATCC 1247... POTA_CHRVO - Spermidine/putrescine import ATP-binding protein PotA OS=Chromobacterium violaceum GN=potA PE=3 SV=1	339.0	[0..1]	[239..1]
gi\|27382307, gi\|... - gi\|27382307\|ref\|NP_773836.1\| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]...	338.0	[0..1]	[239..21]
gi\|167350338, gi... - gi\|167647908\|ref\|YP_001685571.1\| spermidine/putrescine ABC transporter ATPase subunit [Caulobacter s...	338.0	[0..2]	[239..8]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	338.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILEIKHVS KFFGGLAANS DVSFSMEEGM IMGLIGPNGA GKTTLFNCIT GYYPPSRGDV  60
   61 IFDGRKLNGM EPDKVCKLGM VRTWQKVRPL AKLSVLDNVM VGALCRTGSL KVAREIAHEQ 120
  121 LKVVGLDNKS NFLAGGLPIG ERKKLEVARV LATQPKMLLL DEVMGGLNPA ESEEIIQLIL 180
  181 DIKERGGITQ MVIEHDMKAI MRISERIVVL NSGEKLAEGT PEEIVNNQAV VEAYLGSEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.045757
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits