YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997104, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997104, gi|....

Description	E-value	Query Range	Subject Range
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	212.0	[0..3]	[277..556]
gi\|25520371 - pir\|\|E97649 probable permease of ABC transporter (PA4859) [imported] - Agrobacterium tumefaciens (st... gi\|15157590, gi\|... - gi\|15889684\|ref\|NP_355365.1\| hypothetical protein AGR_C_4379 [Agrobacterium tumefaciens str. C58], g...	186.0	[0..21]	[286..337]
gi\|106881932, gi... - gi\|119946608\|ref\|YP_944288.1\| ABC transporter inner-membrane translocator [Psychromonas ingrahamii 3...	186.0	[0..4]	[286..255]
gi\|90414544, gi\|... - gi\|90414544\|ref\|ZP_01222518.1\| putative urea short-chain amide or branched-chain amino acid uptake A...	181.0	[0..4]	[286..250]
gi\|196111480, gi... - gi\|88793947\|ref\|ZP_01109659.1\| Branched-chain amino acid ABC-type transport system, permease compone...	179.0	[0..4]	[286..246]
gi\|84387635, gi\|... - gi\|84387635\|ref\|ZP_00990652.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	179.0	[0..5]	[286..247]
gi\|110637661, gi... - gi\|110637661\|ref\|YP_677868.1\| branched-chain amino acid ABC transporter, permease component [Cytopha... gi\|48855151 - gi\|48855151\|ref\|ZP_00309311.1\| COG0559: Branched-chain amino acid ABC-type transport system, permeas...	179.0	[0..5]	[286..253]
gi\|86164365, gi\|... - gi\|87120262\|ref\|ZP_01076157.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	178.0	[0..4]	[286..266]
gi\|114707991, gi... - gi\|114707991\|ref\|ZP_01440882.1\| putative ureashort-chain amide or branched-chain amino acid uptake A...	176.0	[0..21]	[286..289]
gi\|94426200, gi\|... - gi\|94501624\|ref\|ZP_01308140.1\| Branched-chain amino acid ABC-type transport system, permease compone...	176.0	[0..23]	[286..267]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFLQSLIS GILIGGVYAL IGIGLTIIFG VMRVINFAHG DIMMIGMYLT YNFFSLAGVD  60
   61 PFVSIALTIP LMFLFGAILQ KTFINRVLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALPQNQILLT IGLGLIMSNT MMFIYTSDYK ILTTSYSSSS FNIGTISISW PLAISFLITA  60
   61 AITLLLYWFL MKTDTGQAIR ATAQDREAAQ LMGINVKRMS ILAFGMGAAL AGTAGALISP 120
  121 TYYIFPQIGS TFTLKAFVIT VLGGMGSIVG ATIGGVIIGV AESLGAVYIS SGWKDVVVFV 180
  181 LFLLVLLFKP AGLLGKSKM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits