YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983971, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983971, gi|....

Description	E-value	Query Range	Subject Range
gi\|78171808, gi\|... - gi\|78189609\|ref\|YP_379947.1\| ATP-binding Mrp/Nbp35 family protein [Chlorobium chlorochromatii CaD3],...	157.0	[0..52]	[279..40]
gi\|71906216, gi\|... - gi\|71906216\|ref\|YP_283803.1\| hypothetical protein Daro_0576 [Dechloromonas aromatica RCB], gi\|718458...	157.0	[0..4]	[281..54]
gi\|68244212, gi\|... - gi\|68548654\|ref\|ZP_00588123.1\| ATP-binding protein, Mrp/Nbp35 family [Pelodictyon phaeoclathratiform...	157.0	[0..48]	[280..29]
gi\|78194490, gi\|... - gi\|78223235\|ref\|YP_384982.1\| polysaccharide biosynthesis protein, putative [Geobacter metallireducen...	156.0	[0..5]	[235..30]
gi\|56419731, gi\|... - gi\|56419731\|ref\|YP_147049.1\| signal recognition particle GTPase [Geobacillus kaustophilus HTA426], g... gi\|229498131, gi... - gi\|229498131\|ref\|ZP_04391828.1\| signal recognition particle protein [Geobacillus sp. Y412MC52], gi\|2...	156.0	[0..2]	[277..30]
gi\|82947427, gi\|... - gi\|83312586\|ref\|YP_422850.1\| ATPase involved in chromosome partitioning [Magnetospirillum magneticum...	156.0	[0..4]	[272..75]
gi\|199605327, gi... - gi\|200388229\|ref\|ZP_03214841.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|197937627, gi... - gi\|198243111\|ref\|YP_002216687.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|197241849, gi... - gi\|197263594\|ref\|ZP_03163668.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|197247718, gi... - gi\|197247718\|ref\|YP_002147614.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|213424862 - gi\|213424862\|ref\|ZP_03357612.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213161442 - gi\|213161442\|ref\|ZP_03347152.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|206709828, gi... - gi\|207858025\|ref\|YP_002244676.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|204929456, gi... - gi\|204929456\|ref\|ZP_03220530.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|168823045, gi... - gi\|205340654\|gb\|EDZ27418.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|195633364, gi... - gi\|195633364\|gb\|EDX51778.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168262150, gi... - gi\|205349192\|gb\|EDZ35823.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168244700, gi... - gi\|205336482\|gb\|EDZ23246.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|194736625, gi... - gi\|194736625\|ref\|YP_002115688.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|194456913, gi... - gi\|194470549\|ref\|ZP_03076533.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|194405923, gi... - gi\|194447619\|ref\|YP_002046682.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|194402560, gi... - gi\|194443897\|ref\|YP_002041940.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|62128881, gi\|... - gi\|62181248\|ref\|YP_217665.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|213999735 - gi\|213999735\|ref\|ZP_03410470.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213647495 - gi\|213647495\|ref\|ZP_03377548.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213622617 - gi\|213622617\|ref\|ZP_03375400.1\| signal recognition particle protein [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ffh] [protein=signal recognition particle protein] [protein_id=YP_005238801.1] [location=compl... gi\|161615610, gi... - gi\|161615610\|ref\|YP_001589575.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|168239447, gi... - gi\|197287864\|gb\|EDY27252.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168234200, gi... - gi\|205331826\|gb\|EDZ18590.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|167992457, gi... - gi\|205329303\|gb\|EDZ16067.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|167553522, gi... - gi\|205322062\|gb\|EDZ09901.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|29143001, gi\|... - gi\|29143001\|ref\|NP_806343.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|16761530 - gi\|16761530\|ref\|NP_457147.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|25294415, gi\|... - gi\|25294415\|pir\|\|AI0833 signal recognition particle protein [imported] - Salmonella enterica subsp. ... gi\|16765992, gi\|... - gi\|16765992\|ref\|NP_461607.1\| signal recognition particle protein [Salmonella typhimurium LT2], gi\|16...	156.0	[0..2]	[277..29]
gi\|110806722, gi... - gi\|110806722\|ref\|YP_690242.1\| signal recognition particle protein [Shigella flexneri 5 str. 8401], g...	155.0	[0..2]	[277..29]
gi\|56414642, gi\|... - gi\|56414642\|ref\|YP_151717.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|197363569, gi... - gi\|197363569\|ref\|YP_002143206.1\| signal recognition particle protein [Salmonella enterica subsp. ent...	155.0	[0..2]	[277..29]
gi\|23015795 - gi\|23015795\|ref\|ZP_00055562.1\| COG0489: ATPases involved in chromosome partitioning [Magnetospirillu...	155.0	[0..4]	[272..55]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDLQPLERA ELPPLPAEPL EGIRHDNPLL ATLNDPHSYV SEEYRKLKSA IVAGTSVGEF  60
   61 RNTIMITSTL GGEGKSITAL NLAITLAQEY DNTVLLIDAD LRKPMTAQYL GIPGERGLSE 120
  121 YLSVGAHLPE LLVRTGIGRL SILPAGKPAA NPVELLSSQR MKDLLDEIRH RYPDRYVIID 180
  181 APPALPFAEV RSLSNLVDSI VFVVREGQSS LANIDEAISA LNRKKILGIV FNEASAVGIS 240
  241 SKYGYGYGYG GYGPSAEPAE ARSTAEKTGK LSRILGKRGS K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits