YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983949, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983949, gi|....

Description	E-value	Query Range	Subject Range
gi\|77869287, gi\|... - gi\|77951680\|ref\|ZP_00816099.1\| glycosyl transferase [Marinobacter aquaeolei VT8], gi\|77869287\|gb\|EAP...	191.0	[0..2]	[294..3]
gi\|17132164, gi\|... - gi\|17230562\|ref\|NP_487110.1\| hypothetical protein alr3070 [Nostoc sp. PCC 7120], gi\|17132164\|dbj\|BAB... gi\|25533870 - pir\|\|AG2189 hypothetical protein alr3070 [imported] - Nostoc sp. (strain PCC 7120)	190.0	[0..4]	[292..2]
gi\|75907064, gi\|... - gi\|75907064\|ref\|YP_321360.1\| glycosyl transferase family protein [Anabaena variabilis ATCC 29413], g...	187.0	[0..4]	[292..2]
gi\|78218295, gi\|... - gi\|78355890\|ref\|YP_387339.1\| cell wall biosynthesis glycosyltransferase-like protein [Desulfovibrio ...	181.0	[0..1]	[293..17]
gi\|68169519, gi\|... - gi\|68206625\|ref\|ZP_00558809.1\| Glycosyl transferase, family 2 [Desulfitobacterium hafniense DCB-2], ...	180.0	[0..1]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQPKVSVIV TCYNYATYLE GCLASILNQT YQDFELVIIN DGSTDNTDEV ISRFLDNDKV  60
   61 RYINQKNTGQ AIATNNGIAA AAGELIAFLD ADDLWEPTKL EKQVRLFNRD SIGVVYSRIR 120
  121 FMDAEGCTLD MQLEGKYYTP RSGRVTDALL FENFIPYSST VVRKECFDKF GMFNPEYKNG 180
  181 LDWDLWLRIS REYEFDFVDE YLLIYRIGHP GQLTSNVERS VRCADLIFDR FLEENPGIVP 240
  241 DSVVRKAMAY SYCRRGNQFR KIDRKRSNGF FLNALAKNPA EIGAYVGLVK NFLNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits