YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997034, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997034, gi|....

Description	E-value	Query Range	Subject Range
gi\|48857399, gi\|... - gi\|67917198\|ref\|ZP_00510863.1\| Nicotinate-nucleotide pyrophosphorylase [Clostridium thermocellum ATC...	336.0	[0..1]	[273..4]
gi\|110803622, gi... - gi\|110803622\|ref\|YP_697707.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens SM101...	333.0	[0..5]	[272..7]
gi\|110799313, gi... - gi\|110799313\|ref\|YP_694841.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens ATCC ...	330.0	[0..5]	[272..7]
gi\|18309378, gi\|... - gi\|18309378\|ref\|NP_561312.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens str. 1...	329.0	[0..5]	[272..7]
gi\|77995232, gi\|... - gi\|78043117\|ref\|YP_361169.1\| nicotinate-nucleotide pyrophosphorylase [Carboxydothermus hydrogenoform...	328.0	[0..5]	[275..7]
gi\|146296784, gi... - gi\|82500738\|ref\|ZP_00886138.1\| Nicotinate-nucleotide pyrophosphorylase [Caldicellulosiruptor sacchar...	327.0	[0..5]	[274..8]
gi\|27262196 - gi\|27262196\|gb\|AAN87379.1\| Nicotinate-nucleotide pyrophosphorylase [carboxylating] [Heliobacillus mo...	323.0	[0..4]	[274..8]
gi\|37199711, gi\|... - gi\|37680961\|ref\|NP_935570.1\| quinolinate phosphoribosyltransferase [Vibrio vulnificus YJ016], gi\|371...	323.0	[0..4]	[273..34]
gi\|71839048, gi\|... - gi\|71839048\|ref\|ZP_00678802.1\| Nicotinate-nucleotide pyrophosphorylase [Pelobacter propionicus DSM 2...	323.0	[0..1]	[274..75]
gi\|219992222, gi... - gi\|89211116\|ref\|ZP_01189493.1\| Nicotinate-nucleotide pyrophosphorylase [Halothermothrix orenii H 168...	323.0	[0..4]	[276..8]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLDPIIDN ALQEDIHTGD ITTLSVVPEP RPARARLIAK EPLVLAGIGV AARVFHRLDP  60
   61 AIRFDARFPD GARVETGTLL AEMAGDSAML LQGERVALNL LQRMCGIATL TARYVEAVAG 120
  121 TGARIVDTRK TMPGLRVLDK HAVRLGGGIN HRTGLYDGVL IKENHIAAAG GITEAVRRAR 180
  181 AYIPHTMKIE VETECLEEVA EALEAGADII MLDNMDLDAM RRAVGLIAGR ALVEASGGVN 240
  241 LETVRGIAET GVDIISVGAL THSARAMDIS MLLEAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	1x1oA
Description:	No description for 1x1oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits