YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997014, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997014, gi|....

Description	E-value	Query Range	Subject Range
gi\|3319758, gi\|2... - gi\|3319758\|emb\|CAA19924.1\| putative integral membrane protein [Streptomyces coelicolor A3(2)], gi\|21... gi\|7480824 - pir\|\|T35470 probable integral membrane protein - Streptomyces coelicolor	193.0	[0..5]	[230..179]
gi\|29829165, gi\|... - gi\|29829165\|ref\|NP_823799.1\| phosphatidate cytidylyltransferase [Streptomyces avermitilis MA-4680], ...	189.0	[0..5]	[230..179]
gi\|36788028, gi\|... - gi\|37528590\|ref\|NP_931935.1\| hypothetical protein plu4775 [Photorhabdus luminescens subsp. laumondii...	167.0	[0..18]	[231..98]
gi\|15842422, gi\|... - gi\|15842422\|ref\|NP_337459.1\| phosphatidate cytidylyltransferase, putative [Mycobacterium tuberculosi...	164.0	[0..13]	[229..124]
gi\|78034541, gi\|... - gi\|78046111\|ref\|YP_362286.1\| putative phosphatidate cytidiltransferase [Xanthomonas campestris pv. v...	161.0	[0..18]	[228..108]
gi\|113942909, gi... - gi\|145593877\|ref\|YP_001158174.1\| phosphatidate cytidylyltransferase [Salinispora tropica CNB-440], g...	160.0	[0..32]	[230..283]
CDS5_ARATH - Phosphatidate cytidylyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=CDS5 PE=1 SV=1	160.0	[0..1]	[228..162]
gi\|21106611, gi\|... - gi\|21241292\|ref\|NP_640874.1\| phosphatidate cytidiltransferase [Xanthomonas axonopodis pv. citri str....	159.0	[0..18]	[228..94]
gi\|75908039, gi\|... - gi\|75908039\|ref\|YP_322335.1\| phosphatidate cytidylyltransferase [Anabaena variabilis ATCC 29413], gi...	158.0	[0..15]	[229..119]
gi\|21229981, gi\|... - gi\|21229981\|ref\|NP_635898.1\| phosphatidate cytidiltransferase [Xanthomonas campestris pv. campestris...	158.0	[0..18]	[228..94]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPDRRAEG VAASLAGALI PAFLAAQDRI IEMVPFRTSA TLFAFVLTIV FLAFALRVLF  60
   61 SFRDVRSAAV ETALFATGFL YVPLLLTHLA WLRALPDGVG WIFLVLVIVM SGDTAAYYVG 120
  121 SNLGRRKLYP SVSPNKSVEG AIGGLLGSLA GTFVARLTFF PGLTVLDCIA TALLLGVLGQ 180
  181 VGDLFESLLK RSFGVKDSGT IVPGHGGILD RLDSILFAVP AAYYYALFVF MNR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits