YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997008, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997008, gi|....

Description	E-value	Query Range	Subject Range
gi\|78222475, gi\|... - gi\|78222475\|ref\|YP_384222.1\| acetolactate synthase 3 regulatory subunit [Geobacter metallireducens G...	242.0	[0..1]	[163..1]
gi\|222054606, gi... - gi\|222054606\|ref\|YP_002536968.1\| acetolactate synthase, small subunit [Geobacter sp. FRC-32], gi\|221...	240.0	[0..1]	[162..1]
gi\|148265739, gi... - gi\|88936938\|ref\|ZP_01142530.1\| Acetolactate synthase, small subunit [Geobacter uraniumreducens Rf4],...	239.0	[0..1]	[163..1]
gi\|21226771, gi\|... - gi\|21226771\|ref\|NP_632693.1\| acetolactate synthase 3 regulatory subunit [Methanosarcina mazei Go1], ...	237.0	[0..1]	[159..1]
gi\|86556992, gi\|... - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-2-3B'a... gi\|86608450 - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto...	235.0	[0..1]	[158..1]
gi\|68178913, gi\|... - gi\|95928696\|ref\|ZP_01311442.1\| acetolactate synthase, small subunit [Desulfuromonas acetoxidans DSM ...	235.0	[0..1]	[162..1]
gi\|134298160, gi... - gi\|88944098\|ref\|ZP_01147431.1\| Acetolactate synthase, small subunit [Desulfotomaculum reducens MI-1]...	235.0	[0..1]	[159..1]
gi\|83591078, gi\|... - gi\|83591078\|ref\|YP_431087.1\| acetolactate synthase 3 regulatory subunit [Moorella thermoacetica ATCC...	235.0	[0..1]	[160..1]
gi\|78043291, gi\|... - gi\|78043291\|ref\|YP_359376.1\| acetolactate synthase 3 regulatory subunit [Carboxydothermus hydrogenof...	235.0	[0..1]	[160..1]
gi\|20092587, gi\|... - gi\|20092587\|ref\|NP_618662.1\| acetolactate synthase 3 regulatory subunit [Methanosarcina acetivorans ...	235.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHTITVLVE NEFGVLSRVA GLFSGRGFNI DSLSVAPTND ESISRMTIVT RGDDQILEQI  60
   61 TKQLNKLIDV IKVIDFTDGE VIEREMALIK VTAEDDARAE VLRIVDIFRS KIIDVTPRSF 120
  121 TIEATGTPAK IDAILELLRP LGLKELVRTG PAAIGRGAKG WKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	2pc6A
Description:	No description for 2pc6A was found.

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	14.1096734416761	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	12.4176994384119	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: