YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997005, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997005, gi|....

Description	E-value	Query Range	Subject Range
gi\|85694935, gi\|... - gi\|85711022\|ref\|ZP_01042082.1\| Phosphatidylserine synthase [Idiomarina baltica OS145], gi\|85694935\|g...	191.0	[0..2]	[231..16]
gi\|48845999, gi\|... - gi\|78222478\|ref\|YP_384225.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Geobacter metalli...	191.0	[0..1]	[247..12]
gi\|68555597, gi\|... - gi\|94309861\|ref\|YP_583071.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ralstonia metalli...	190.0	[0..2]	[245..47]
gi\|78360297, gi\|... - gi\|78367652\|ref\|ZP_00837917.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella sp. ...	189.0	[0..3]	[231..12]
gi\|88698686, gi\|... - gi\|88707036\|ref\|ZP_01104732.1\| CDP-alcohol phosphatidyltransferase family protein [gamma proteobacte...	187.0	[0..2]	[231..80]
gi\|159121111, gi... - gi\|94494129\|ref\|ZP_01301332.1\| hypothetical protein Rgryl_01000661 [Rickettsiella grylli], gi\|160872...	186.0	[0..2]	[240..42]
gi\|71838142, gi\|... - gi\|71838142\|ref\|ZP_00677903.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Pelobacter prop...	185.0	[0..2]	[245..17]
gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin... gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin...	184.0	[0..2]	[234..37]
gi\|109897665, gi... - gi\|76795147\|ref\|ZP_00777582.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Pseudoalteromon...	184.0	[0..2]	[228..6]
gi\|90022183, gi\|... - gi\|90022183\|ref\|YP_528010.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Saccharophagus de...	182.0	[0..2]	[236..38]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGIYILPN LFTTGSLFAG FYGMVATMNG DFKTAALWVL ISSIFDGLDG KVARLTGTSS  60
   61 KFGVEYDSLA DVVAFGVAPG LLMYKWALQP FGRLGWLAAF LFVVCGALRL ARFNVQVNTV 120
  121 ENKRFVGLPI PAAASMVSAT VLLFYHFGWP SSYKKVAILA LIYLLAFLMV SSFRYYSFKD 180
  181 PELIKRQPFA MLVLAVLLLI VIAAEPVVML FVIFFCYTFS GIIGFFMSLP RRRRLEKALH 240
  241 HRHAKDDH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.387216
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits